Information for 7-RTCRTCAGSASKGGRG (Motif 8)

C T A G A G C T A G T C C T G A A C G T A G T C C G T A A C T G A T G C C G T A A T C G A C G T A C T G A T C G C T G A A C T G
Reverse Opposite:
A G T C G A C T A T G C A G T C G T C A A T G C A C G T A T C G A G T C A C G T A C T G C G T A A G C T A C T G C T G A A G T C
p-value:1e-11
log p-value:-2.605e+01
Information Content per bp:1.848
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.0 +/- 24.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.57
Offset:3
Orientation:forward strand
Alignment:RTCRTCAGSASKGGRG
---CACAGCAGGGGG-
 C T A G A G C T A G T C C T G A A C G T A G T C C G T A A C T G A T G C C G T A A T C G A C G T A C T G A T C G C T G A A C T G
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

NRL/MA0842.1/Jaspar

Match Rank:2
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:RTCRTCAGSASKGGRG
---GTCAGCANNTN--
 C T A G A G C T A G T C C T G A A C G T A G T C C G T A A C T G A T G C C G T A A T C G A C G T A C T G A T C G C T G A A C T G
A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:RTCRTCAGSASKGGRG
TGAGTCAGCA------
 C T A G A G C T A G T C C T G A A C G T A G T C C G T A A C T G A T G C C G T A A T C G A C G T A C T G A T C G C T G A A C T G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:RTCRTCAGSASKGGRG
--NGTCAGCANTTT--
 C T A G A G C T A G T C C T G A A C G T A G T C C G T A A C T G A T G C C G T A A T C G A C G T A C T G A T C G C T G A A C T G
A C G T A C G T G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:5
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:RTCRTCAGSASKGGRG
GTCATN----------
 C T A G A G C T A G T C C T G A A C G T A G T C C G T A A C T G A T G C C G T A A T C G A C G T A C T G A T C G C T G A A C T G
T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:RTCRTCAGSASKGGRG-
--DCHCAGCAGGRGGCC
 C T A G A G C T A G T C C T G A A C G T A G T C C G T A A C T G A T G C C G T A A T C G A C G T A C T G A T C G C T G A A C T G A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Atf3/MA0605.1/Jaspar

Match Rank:7
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--RTCRTCAGSASKGGRG
ACGTCATC----------
 A C G T A C G T C T A G A G C T A G T C C T G A A C G T A G T C C G T A A C T G A T G C C G T A A T C G A C G T A C T G A T C G C T G A A C T G
C T G A G A T C A C T G A C G T G T A C C G T A A G C T A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:8
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:RTCRTCAGSASKGGRG
-ACGTCA---------
 C T A G A G C T A G T C C T G A A C G T A G T C C G T A A C T G A T G C C G T A A T C G A C G T A C T G A T C G C T G A A C T G
A C G T C T G A A G T C T C A G A C G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0017.1_Cux1_2/Jaspar

Match Rank:9
Score:0.48
Offset:-5
Orientation:reverse strand
Alignment:-----RTCRTCAGSASKGGRG
TAGTGATCATCATTA------
 A C G T A C G T A C G T A C G T A C G T C T A G A G C T A G T C C T G A A C G T A G T C C G T A A C T G A T G C C G T A A T C G A C G T A C T G A T C G C T G A A C T G
G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:RTCRTCAGSASKGGRG
--DCTCAGCAGG----
 C T A G A G C T A G T C C T G A A C G T A G T C C G T A A C T G A T G C C G T A A T C G A C G T A C T G A T C G C T G A A C T G
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T