Information for 11-CTCATGGATCATG (Motif 25)

A G T C A C G T A G T C G T C A C G A T A C T G A T C G C G T A C G A T A G T C G T C A C G A T A C T G
Reverse Opposite:
A G T C C G T A A C G T A C T G C G T A A C G T A T G C A G T C C G T A A C G T A C T G C G T A A C T G
p-value:1e-8
log p-value:-2.058e+01
Information Content per bp:1.875
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.6 +/- 34.0bp
Average Position of motif in Background80.2 +/- 11.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTCATGGATCATG
GYCATCMATCAT-
 A G T C A C G T A G T C G T C A C G A T A C T G A T C G C G T A C G A T A G T C G T C A C G A T A C T G
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CTCATGGATCATG
----NGGATTAN-
 A G T C A C G T A G T C G T C A C G A T A C T G A T C G C G T A C G A T A G T C G T C A C G A T A C T G
A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTCATGGATCATG
-TCATCAATCA--
 A G T C A C G T A G T C G T C A C G A T A C T G A T C G C G T A C G A T A G T C G T C A C G A T A C T G
A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTCATGGATCATG
--AATGTATCAAT
 A G T C A C G T A G T C G T C A C G A T A C T G A T C G C G T A C G A T A G T C G T C A C G A T A C T G
A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTCATGGATCATG---
-TCATGAATWATTCAT
 A G T C A C G T A G T C G T C A C G A T A C T G A T C G C G T A C G A T A G T C G T C A C G A T A C T G A C G T A C G T A C G T
A C G T G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTCATGGATCATG---
-WYATGCATWATGCAT
 A G T C A C G T A G T C G T C A C G A T A C T G A T C G C G T A C G A T A G T C G T C A C G A T A C T G A C G T A C G T A C G T
A C G T C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTCATGGATCATG
GGCTCYAKCAYC---
 A C G T A C G T A G T C A C G T A G T C G T C A C G A T A C T G A T C G C G T A C G A T A G T C G T C A C G A T A C T G
C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C A C G T A C G T A C G T

NFE2/MA0841.1/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTCATGGATCATG
--GATGAGTCATN
 A G T C A C G T A G T C G T C A C G A T A C T G A T C G C G T A C G A T A G T C G T C A C G A T A C T G
A C G T A C G T T A C G T C G A A C G T C T A G T C G A A T C G C A G T G T A C C T G A A G C T A C T G

POU4F2/MA0683.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTCATGGATCATG---
CTCATTAATTATGCAT
 A G T C A C G T A G T C G T C A C G A T A C T G A T C G C G T A C G A T A G T C G T C A C G A T A C T G A C G T A C G T A C G T
A G T C G A C T T G A C T G C A A G C T G A C T C G T A C G T A C G A T G C A T C G T A C G A T C A T G G A T C C T G A G A C T

Hoxa9/MA0594.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTCATGGATCATG
GCCATAAATCA--
 A G T C A C G T A G T C G T C A C G A T A C T G A T C G C G T A C G A T A G T C G T C A C G A T A C T G
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T