Information for 3-CATGTTAAAG (Motif 9)

G A T C G C T A A C G T A C T G A C G T C G A T C T G A G T C A G T C A A C T G
Reverse Opposite:
A G T C A C G T A C G T A G C T C G T A G T C A A G T C C G T A C G A T C A T G
p-value:1e-10
log p-value:-2.502e+01
Information Content per bp:1.850
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif21.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets55.7 +/- 28.3bp
Average Position of motif in Background51.8 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0085.1_Irx4/Jaspar

Match Rank:1
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------CATGTTAAAG-
AATATACATGTAAAACA
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C G C T A A C G T A C T G A C G T C G A T C T G A G T C A G T C A A C T G A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

PH0086.1_Irx5/Jaspar

Match Rank:2
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------CATGTTAAAG-
AATATACATGTAAAATT
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C G C T A A C G T A C T G A C G T C G A T C T G A G T C A G T C A A C T G A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CATGTTAAAG--
TATGCWAATBAV
 G A T C G C T A A C G T A C T G A C G T C G A T C T G A G T C A G T C A A C T G A C G T A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

PB0109.1_Bbx_2/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CATGTTAAAG----
NNNNCTGTTAACNNTNN
 A C G T A C G T A C G T G A T C G C T A A C G T A C T G A C G T C G A T C T G A G T C A G T C A A C T G A C G T A C G T A C G T A C G T
A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A

PH0083.1_Irx3_1/Jaspar

Match Rank:5
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CATGTTAAAG-
AAAATACATGTAATACT
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C G C T A A C G T A C T G A C G T C G A T C T G A G T C A G T C A A C T G A C G T
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

PH0082.1_Irx2/Jaspar

Match Rank:6
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CATGTTAAAG-
TAAATACATGTAAAATT
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C G C T A A C G T A C T G A C G T C G A T C T G A G T C A G T C A A C T G A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

PH0087.1_Irx6/Jaspar

Match Rank:7
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CATGTTAAAG-
AAAATACATGTAAAAAT
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C G C T A A C G T A C T G A C G T C G A T C T G A G T C A G T C A A C T G A C G T
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T

PH0084.1_Irx3_2/Jaspar

Match Rank:8
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CATGTTAAAG-
AATATACATGTAATATA
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C G C T A A C G T A C T G A C G T C G A T C T G A G T C A G T C A A C T G A C G T
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CATGTTAAAG--
WATGCAAATGAG
 G A T C G C T A A C G T A C T G A C G T C G A T C T G A G T C A G T C A A C T G A C G T A C G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

FOXD1/MA0031.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CATGTTAAAG
-ATGTTTAC-
 G A T C G C T A A C G T A C T G A C G T C G A T C T G A G T C A G T C A A C T G
A C G T G C T A A C G T C A T G A C G T A C G T A C G T C G T A A G T C A C G T