Information for 6-CTVCGVTCTGGGG (Motif 12)

A G T C A G C T T A G C A T G C A T C G T C G A A C G T A G T C A C G T A C T G A C T G A C T G A T C G
Reverse Opposite:
T A G C A G T C A G T C A G T C C G T A A C T G C G T A A G C T A T G C A T C G A T C G C T G A T A C G
p-value:1e-10
log p-value:-2.410e+01
Information Content per bp:1.797
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.57%
Number of Background Sequences with motif64.2
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets38.1 +/- 28.5bp
Average Position of motif in Background51.9 +/- 24.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CTVCGVTCTGGGG
---CTGTCTGG--
 A G T C A G C T T A G C A T G C A T C G T C G A A C G T A G T C A C G T A C T G A C T G A C T G A T C G
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.64
Offset:4
Orientation:forward strand
Alignment:CTVCGVTCTGGGG-
----GGTCTGGCAT
 A G T C A G C T T A G C A T G C A T C G T C G A A C G T A G T C A C G T A C T G A C T G A C T G A T C G A C G T
A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTVCGVTCTGGGG---
NNTNNTGTCTGGNNTNG
 A C G T A G T C A G C T T A G C A T G C A T C G T C G A A C G T A G T C A C G T A C T G A C T G A C T G A T C G A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CTVCGVTCTGGGG-
----WDNCTGGGCA
 A G T C A G C T T A G C A T G C A T C G T C G A A C G T A G T C A C G T A C T G A C T G A C T G A T C G A C G T
A C G T A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTVCGVTCTGGGG
-VBSYGTCTGG--
 A G T C A G C T T A G C A T G C A T C G T C G A A C G T A G T C A C G T A C T G A C T G A C T G A T C G
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTVCGVTCTGGGG-
-TGCCCTGAGGGCA
 A G T C A G C T T A G C A T G C A T C G T C G A A C G T A G T C A C G T A C T G A C T G A C T G A T C G A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTVCGVTCTGGGG--
CCNNACCATCTGGCCTN
 A C G T A C G T A G T C A G C T T A G C A T G C A T C G T C G A A C G T A G T C A C G T A C T G A C T G A C T G A T C G A C G T A C G T
A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTVCGVTCTGGGG
--GCCATCTGTT-
 A G T C A G C T T A G C A T G C A T C G T C G A A C G T A G T C A C G T A C T G A C T G A C T G A T C G
A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:9
Score:0.55
Offset:8
Orientation:forward strand
Alignment:CTVCGVTCTGGGG-
--------TGGGGA
 A G T C A G C T T A G C A T G C A T C G T C G A A C G T A G T C A C G T A C T G A C T G A C T G A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G C T A G A C T G A C T G C T G A

INSM1/MA0155.1/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CTVCGVTCTGGGG---
----TGTCAGGGGGCG
 A G T C A G C T T A G C A T G C A T C G T C G A A C G T A G T C A C G T A C T G A C T G A C T G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G