Information for 3-ACRGCAGAGRGWKCTC (Motif 4)

T C G A A T G C C T G A C T A G G T A C C G T A C T A G C T G A C T A G T C A G A C T G C G A T A C T G A G T C C G A T A T G C
Reverse Opposite:
A T C G G C T A C T A G T G A C G C T A T G A C A G T C A G T C A G C T A G T C C G A T A C T G A G T C A G C T A T C G A G C T
p-value:1e-14
log p-value:-3.394e+01
Information Content per bp:1.717
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.7 +/- 17.8bp
Average Position of motif in Background36.3 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:1
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:ACRGCAGAGRGWKCTC
---ACAAAGGNBCCT-
 T C G A A T G C C T G A C T A G G T A C C G T A C T A G C T G A C T A G T C A G A C T G C G A T A C T G A G T C C G A T A T G C
A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ACRGCAGAGRGWKCTC
ACATCAAAGGNA----
 T C G A A T G C C T G A C T A G G T A C C G T A C T A G C T G A C T A G T C A G A C T G C G A T A C T G A G T C C G A T A T G C
C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ACRGCAGAGRGWKCTC---
GCCASCAGGGGGCGCYVNNG
 A C G T T C G A A T G C C T G A C T A G G T A C C G T A C T A G C T G A C T A G T C A G A C T G C G A T A C T G A G T C C G A T A T G C A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0040.1_Lef1_1/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---ACRGCAGAGRGWKCTC
NANAGATCAAAGGGNNN--
 A C G T A C G T A C G T T C G A A T G C C T G A C T A G G T A C C G T A C T A G C T G A C T A G T C A G A C T G C G A T A C T G A G T C C G A T A T G C
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ACRGCAGAGRGWKCTC
TAGGGCAAAGGTCA---
 A C G T T C G A A T G C C T G A C T A G G T A C C G T A C T A G C T G A C T A G T C A G A C T G C G A T A C T G A G T C C G A T A T G C
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--ACRGCAGAGRGWKCTC
GTAGGGCAAAGGTCA---
 A C G T A C G T T C G A A T G C C T G A C T A G G T A C C G T A C T A G C T G A C T A G T C A G A C T G C G A T A C T G A G T C C G A T A T G C
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:ACRGCAGAGRGWKCTC
GGAACAAAGR------
 T C G A A T G C C T G A C T A G G T A C C G T A C T A G C T G A C T A G T C A G A C T G C G A T A C T G A G T C C G A T A T G C
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--ACRGCAGAGRGWKCTC
AAAGATCAAAGGAA----
 A C G T A C G T T C G A A T G C C T G A C T A G G T A C C G T A C T A G C T G A C T A G T C A G A C T G C G A T A C T G A G T C C G A T A T G C
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-ACRGCAGAGRGWKCTC
CACAGCAGGGGG-----
 A C G T T C G A A T G C C T G A C T A G G T A C C G T A C T A G C T G A C T A G T C A G A C T G C G A T A C T G A G T C C G A T A T G C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:ACRGCAGAGRGWKCTC
ACWTCAAAGG------
 T C G A A T G C C T G A C T A G G T A C C G T A C T A G C T G A C T A G T C A G A C T G C G A T A C T G A G T C C G A T A T G C
C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T