Information for 9-TTAAGAGGCG (Motif 13)

A C G T A C G T C G T A C G T A A C T G C T G A C T A G A T C G A G T C T A C G
Reverse Opposite:
A T G C C T A G A T G C A G T C A G C T A G T C A C G T C G A T G T C A C G T A
p-value:1e-9
log p-value:-2.256e+01
Information Content per bp:1.854
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.43%
Number of Background Sequences with motif49.5
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets42.3 +/- 23.2bp
Average Position of motif in Background53.8 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TTAAGAGGCG
BTBRAGTGSN-
 A C G T A C G T A C G T C G T A C G T A A C T G C T G A C T A G A T C G A G T C T A C G
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGAGGCG---
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G C T G A C T A G A T C G A G T C T A C G A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TTAAGAGGCG
TTAAGTGGN-
 A C G T A C G T C G T A C G T A A C T G C T G A C T A G A T C G A G T C T A C G
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TTAAGAGGCG
TTAAGTGGT-
 A C G T A C G T C G T A C G T A A C T G C T G A C T A G A T C G A G T C T A C G
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TTAAGAGGCG
CTYRAGTGSY-
 A C G T A C G T A C G T C G T A C G T A A C T G C T G A C T A G A T C G A G T C T A C G
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTAAGAGGCG
TTGAGTGSTT
 A C G T A C G T C G T A C G T A A C T G C T G A C T A G A T C G A G T C T A C G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGAGGCG---
NTNNTTAAGTGGTTANN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G C T G A C T A G A T C G A G T C T A C G A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTAAGAGGCG
NTCAAGTGGN-
 A C G T A C G T A C G T C G T A C G T A A C T G C T G A C T A G A T C G A G T C T A C G
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGAGGCG--
AATNTTAAGTGGNTNN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G C T G A C T A G A T C G A G T C T A C G A C G T A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

PH0113.1_Nkx2-4/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGAGGCG--
AATTTCAAGTGGCTTN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G C T G A C T A G A T C G A G T C T A C G A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A