Information for 7-CTGACCGCAG (Motif 17)

A G T C A C G T A T C G C T G A A T G C G A T C C T A G A G T C C G T A T C A G
Reverse Opposite:
A G T C G C A T A C T G G A T C C T A G A T C G A G C T A T G C C G T A A C T G
p-value:1e-8
log p-value:-2.050e+01
Information Content per bp:1.844
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif114.8
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets50.4 +/- 28.3bp
Average Position of motif in Background50.7 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTGACCGCAG
-TGACCYCT-
 A G T C A C G T A T C G C T G A A T G C G A T C C T A G A G T C C G T A T C A G
A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T

RUNX2/MA0511.2/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTGACCGCAG
-AAACCGCAA
 A G T C A C G T A T C G C T G A A T G C G A T C C T A G A G T C C G T A T C A G
A C G T G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTGACCGCAG
-TGACCTYA-
 A G T C A C G T A T C G C T G A A T G C G A T C C T A G A G T C C G T A T C A G
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTGACCGCAG
NAAACCACAG
 A G T C A C G T A T C G C T G A A T G C G A T C C T A G A G T C C G T A T C A G
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

PB0118.1_Esrra_2/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CTGACCGCAG---
NNNNTTGACCCCTNNNN
 A C G T A C G T A C G T A C G T A G T C A C G T A T C G C T G A A T G C G A T C C T A G A G T C C G T A T C A G A C G T A C G T A C G T
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CTGACCGCAG---
TGTCGTGACCCCTTAAT
 A C G T A C G T A C G T A C G T A G T C A C G T A T C G C T G A A T G C G A T C C T A G A G T C C G T A T C A G A C G T A C G T A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

RUNX3/MA0684.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTGACCGCAG-
-AAACCGCAAA
 A G T C A C G T A T C G C T G A A T G C G A T C C T A G A G T C C G T A T C A G A C G T
A C G T G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTGACCGCAG
-TGACCT---
 A G T C A C G T A T C G C T G A A T G C G A T C C T A G A G T C C G T A T C A G
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTGACCGCAG-
-AAACCACAGC
 A G T C A C G T A T C G C T G A A T G C G A T C C T A G A G T C C G T A T C A G A C G T
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

PB0030.1_Hnf4a_1/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CTGACCGCAG---
NNANTTGACCCCTNNNN
 A C G T A C G T A C G T A C G T A G T C A C G T A T C G C T G A A T G C G A T C C T A G A G T C C G T A T C A G A C G T A C G T A C G T
A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G