Information for 12-GCCCACAVGDTTT (Motif 13)

C T A G A G T C A G T C A G T C C T G A A T G C C G T A T A C G A C T G C G A T A C G T C G A T A C G T
Reverse Opposite:
G T C A C G T A C G T A G C T A A G T C A G T C A C G T A T C G G A C T A C T G A C T G A C T G A G T C
p-value:1e-9
log p-value:-2.190e+01
Information Content per bp:1.790
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.54%
Number of Background Sequences with motif65.3
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets47.7 +/- 21.8bp
Average Position of motif in Background56.0 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCCCACAVGDTTT
CTGCCCGCA------
 A C G T A C G T C T A G A G T C A G T C A G T C C T G A A T G C C G T A T A C G A C T G C G A T A C G T C G A T A C G T
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T

GCM2/MA0767.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCCCACAVGDTTT
TACCCGCATN----
 A C G T C T A G A G T C A G T C A G T C C T G A A T G C C G T A T A C G A C T G C G A T A C G T C G A T A C G T
G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A A C G T A C G T A C G T A C G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCCCACAVGDTTT
TCGTACCCGCATCATT-
 A C G T A C G T A C G T A C G T C T A G A G T C A G T C A G T C C T G A A T G C C G T A T A C G A C T G C G A T A C G T C G A T A C G T
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCCCACAVGDTTT
NTGCCCANNGGTNA-
 A C G T A C G T C T A G A G T C A G T C A G T C C T G A A T G C C G T A T A C G A C T G C G A T A C G T C G A T A C G T
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T

GCM1/MA0646.1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCCCACAVGDTTT
GTACCCGCATN----
 A C G T A C G T C T A G A G T C A G T C A G T C C T G A A T G C C G T A T A C G A C T G C G A T A C G T C G A T A C G T
T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G A C G T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCCCACAVGDTTT
ATGCCCTGAGGC---
 A C G T A C G T C T A G A G T C A G T C A G T C C T G A A T G C C G T A T A C G A C T G C G A T A C G T C G A T A C G T
G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCCCACAVGDTTT
AAACCACAGAN---
 A C G T C T A G A G T C A G T C A G T C C T G A A T G C C G T A T A C G A C T G C G A T A C G T C G A T A C G T
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCCCACAVGDTTT
WTGSCCTSAGGS---
 A C G T A C G T C T A G A G T C A G T C A G T C C T G A A T G C C G T A T A C G A C T G C G A T A C G T C G A T A C G T
G C T A G A C T C A T G A T G C A G T C A G T C G A C T T A C G C T G A C T A G A C T G T A G C A C G T A C G T A C G T

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCCCACAVGDTTT
YCCGCCCACGCN----
 A C G T A C G T A C G T C T A G A G T C A G T C A G T C C T G A A T G C C G T A T A C G A C T G C G A T A C G T C G A T A C G T
G A T C G T A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C C T A G A T G C T C G A A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCCCACAVGDTTT
NWAACCACADNN---
 A C G T A C G T C T A G A G T C A G T C A G T C C T G A A T G C C G T A T A C G A C T G C G A T A C G T C G A T A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T