Information for 16-CCCCAGCCAG (Motif 30)

T A G C T A G C A G T C T G A C T G C A T C A G G T A C A T G C G T C A C T A G
Reverse Opposite:
A G T C A C G T A T C G A C T G A G T C A C G T A C T G A C T G A T C G A T C G
p-value:1e-7
log p-value:-1.839e+01
Information Content per bp:1.766
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif3.92%
Number of Background Sequences with motif571.3
Percentage of Background Sequences with motif1.20%
Average Position of motif in Targets43.6 +/- 25.5bp
Average Position of motif in Background49.0 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CCCCAGCCAG
--CCAGACAG
 T A G C T A G C A G T C T G A C T G C A T C A G G T A C A T G C G T C A C T A G
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CCCCAGCCAG----
CAAATCCAGACATCACA
 A C G T A C G T A C G T T A G C T A G C A G T C T G A C T G C A T C A G G T A C A T G C G T C A C T A G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CCCCAGCCAG
--BCAGACWA
 T A G C T A G C A G T C T G A C T G C A T C A G G T A C A T G C G T C A C T A G
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

INSM1/MA0155.1/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CCCCAGCCAG
CGCCCCCTGACA-
 A C G T A C G T A C G T T A G C T A G C A G T C T G A C T G C A T C A G G T A C A T G C G T C A C T A G
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCCCAGCCAG--
--CCAGACRSVB
 T A G C T A G C A G T C T G A C T G C A T C A G G T A C A T G C G T C A C T A G A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CCCCAGCCAG---
---ATGCCAGACN
 T A G C T A G C A G T C T G A C T G C A T C A G G T A C A T G C G T C A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

PB0164.1_Smad3_2/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCCCAGCCAG----
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T T A G C T A G C A G T C T G A C T G C A T C A G G T A C A T G C G T C A C T A G A C G T A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

PB0167.1_Sox13_2/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CCCCAGCCAG---
ANNTNCCCACCCANNAC
 A C G T A C G T A C G T A C G T T A G C T A G C A G T C T G A C T G C A T C A G G T A C A T G C G T C A C T A G A C G T A C G T A C G T
G T C A C G T A C G A T C G A T C G T A G T A C G T A C T A G C C G T A G A T C G T A C G T A C C T G A C T G A G A C T G C T A G A T C

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CCCCAGCCAG
----TGCCAA
 T A G C T A G C A G T C T G A C T G C A T C A G G T A C A T G C G T C A C T A G
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CCCCAGCCAG-
-----CACAGN
 T A G C T A G C A G T C T G A C T G C A T C A G G T A C A T G C G T C A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C