Information for 7-TGAAGCCATTAAGCTT (Motif 25)

A C G T A C T G C G T A C G T A A C T G A T G C A G T C G T C A C A G T A C G T C T G A C T G A A C T G A G T C A C G T A C G T
Reverse Opposite:
G T C A C G T A A C T G A G T C A G C T G A C T C G T A G C T A A C G T A C T G A T C G G T A C A C G T A C G T A G T C C G T A
p-value:1e-8
log p-value:-1.970e+01
Information Content per bp:1.910
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.6 +/- 31.9bp
Average Position of motif in Background35.0 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TGAAGCCATTAAGCTT
---GGCCATTAAC---
 A C G T A C T G C G T A C G T A A C T G A T G C A G T C G T C A C A G T A C G T C T G A C T G A A C T G A G T C A C G T A C G T
A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TGAAGCCATTAAGCTT
--AAACMATTAN----
 A C G T A C T G C G T A C G T A A C T G A T G C A G T C G T C A C A G T A C G T C T G A C T G A A C T G A G T C A C G T A C G T
A C G T A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:3
Score:0.58
Offset:10
Orientation:reverse strand
Alignment:TGAAGCCATTAAGCTT-
----------AAGCTTG
 A C G T A C T G C G T A C G T A A C T G A T G C A G T C G T C A C A G T A C G T C T G A C T G A A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G

PH0073.1_Hoxc9/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TGAAGCCATTAAGCTT
GGAGGTCATTAATTAT
 A C G T A C T G C G T A C G T A A C T G A T G C A G T C G T C A C A G T A C G T C T G A C T G A A C T G A G T C A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TGAAGCCATTAAGCTT-
NNNTGAACTCNNTGACCTCN
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G A T G C A G T C G T C A C A G T A C G T C T G A C T G A A C T G A G T C A C G T A C G T A C G T
G T A C G A T C G T C A G C A T T C A G G T C A G T C A G T A C A G C T A G T C C G T A T A C G G C A T T A C G T G C A G T A C G A T C G A C T A G T C G A C T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGAAGCCATTAAGCTT
TGAACCCGATGACCC-
 A C G T A C T G C G T A C G T A A C T G A T G C A G T C G T C A C A G T A C G T C T G A C T G A A C T G A G T C A C G T A C G T
A G C T C T A G C G T A C G T A A G T C A G C T A G T C A C T G C G A T A G C T C T A G C G T A G T A C A G T C A G T C A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TGAAGCCATTAAGCTT
AAAAACCATTAAGG--
 A C G T A C T G C G T A C G T A A C T G A T G C A G T C G T C A C A G T A C G T C T G A C T G A A C T G A G T C A C G T A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G A C G T A C G T

PH0088.1_Isl2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGAAGCCATTAAGCTT
CAAAATCAATTAATTT-
 A C G T A C G T A C T G C G T A C G T A A C T G A T G C A G T C G T C A C A G T A C G T C T G A C T G A A C T G A G T C A C G T A C G T
G T A C G C T A G T C A G T C A G T C A A G C T G A T C G T C A G T C A G A C T G A C T C G T A C T G A C A G T C G A T G A C T A C G T

JUN/MA0488.1/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----TGAAGCCATTAAGCTT
AAGATGATGTCAT-------
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G A T G C A G T C G T C A C A G T A C G T C T G A C T G A A C T G A G T C A C G T A C G T
C G T A C G T A C T A G T C G A A C G T A C T G C G T A A C G T A T C G G A C T G T A C C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TGAAGCCATTAAGCTT
---ACCGATTAG----
 A C G T A C T G C G T A C G T A A C T G A T G C A G T C G T C A C A G T A C G T C T G A C T G A A C T G A G T C A C G T A C G T
A C G T A C G T A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T A C G T A C G T A C G T