Information for 14-CTGCTGTGTSCAA (Motif 9)

A G T C A C G T A T C G G T A C A C G T A C T G A C G T A C T G C G A T A T C G A G T C C G T A G T C A
Reverse Opposite:
A C G T A C G T A C T G T A C G C G T A G T A C C G T A A G T C C G T A A C T G A T G C C G T A A C T G
p-value:1e-10
log p-value:-2.331e+01
Information Content per bp:1.881
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.3 +/- 25.8bp
Average Position of motif in Background46.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGTGTSCAA
CCCCCTGCTGTG-----
 A C G T A C G T A C G T A C G T A G T C A C G T A T C G G T A C A C G T A C T G A C G T A C T G C G A T A T C G A G T C C G T A G T C A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGTGTSCAA
NNTCCTGCTGTGNNN--
 A C G T A C G T A C G T A C G T A G T C A C G T A T C G G T A C A C G T A C T G A C G T A C T G C G A T A T C G A G T C C G T A G T C A
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGTGTSCAA
TNTCCTGCTGTGNNG--
 A C G T A C G T A C G T A C G T A G T C A C G T A T C G G T A C A C G T A C T G A C G T A C T G C G A T A T C G A G T C C G T A G T C A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGTGTSCAA
TCNCCTGCTGNGNNN--
 A C G T A C G T A C G T A C G T A G T C A C G T A T C G G T A C A C G T A C T G A C G T A C T G C G A T A T C G A G T C C G T A G T C A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTGCTGTGTSCAA
CCTGCTGAGH----
 A C G T A G T C A C G T A T C G G T A C A C G T A C T G A C G T A C T G C G A T A T C G A G T C C G T A G T C A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------CTGCTGTGTSCAA
GGCCYCCTGCTGDGH----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A T C G G T A C A C G T A C T G A C G T A C T G C G A T A T C G A G T C C G T A G T C A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T

MTF1/MA0863.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTGCTGTGTSCAA-
GTGCCGTGTGCAAA
 A G T C A C G T A T C G G T A C A C G T A C T G A C G T A C T G C G A T A T C G A G T C C G T A G T C A A C G T
C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTGCTGTGTSCAA
CAGCTGTT-----
 A G T C A C G T A T C G G T A C A C G T A C T G A C G T A C T G C G A T A T C G A G T C C G T A G T C A
A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTGCTGTGTSCAA
--GCTGTG-----
 A G T C A C G T A T C G G T A C A C G T A C T G A C G T A C T G C G A T A T C G A G T C C G T A G T C A
A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTGCTGTGTSCAA
CCAGCTGTTN----
 A C G T A G T C A C G T A T C G G T A C A C G T A C T G A C G T A C T G C G A T A T C G A G T C C G T A G T C A
T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A A C G T A C G T A C G T A C G T