Information for 17-CCTGTCCCTGCAG (Motif 14)

A T G C A T G C A C G T A T C G A C G T A G T C G T A C G T A C C G A T A T C G G T A C C T G A A C T G
Reverse Opposite:
A G T C G A C T C A T G A T G C C G T A A C T G A C T G A C T G T G C A A T G C T G C A A T C G A T C G
p-value:1e-7
log p-value:-1.800e+01
Information Content per bp:1.769
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.85%
Number of Background Sequences with motif143.9
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets46.7 +/- 28.4bp
Average Position of motif in Background48.3 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)-1.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCTGTCCCTGCAG--
---CCCCCTGCTGTG
 A T G C A T G C A C G T A T C G A C G T A G T C G T A C G T A C C G A T A T C G G T A C C T G A A C T G A C G T A C G T
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCTGTCCCTGCAG
-CTGTTCCTGG--
 A T G C A T G C A C G T A T C G A C G T A G T C G T A C G T A C C G A T A T C G G T A C C T G A A C T G
A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCTGTCCCTGCAG---
-GGCCYCCTGCTGDGH
 A T G C A T G C A C G T A T C G A C G T A G T C G T A C G T A C C G A T A T C G G T A C C T G A A C T G A C G T A C G T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCTGTCCCTGCAG
BNTGDCCTTG---
 A T G C A T G C A C G T A T C G A C G T A G T C G T A C G T A C C G A T A T C G G T A C C T G A A C T G
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.57
Offset:6
Orientation:forward strand
Alignment:CCTGTCCCTGCAG---
------CCTGCTGAGH
 A T G C A T G C A C G T A T C G A C G T A G T C G T A C G T A C C G A T A T C G G T A C C T G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CCTGTCCCTGCAG----
--ATTCCCTGAGGGGAA
 A T G C A T G C A C G T A T C G A C G T A G T C G T A C G T A C C G A T A T C G G T A C C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G A C T A T G C G T A C A G T C A G C T A T C G T C G A C T A G A C T G T A C G C T A G C G T A C T G A

PH0141.1_Pknox2/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CCTGTCCCTGCAG
AAGCACCTGTCAATAT--
 A C G T A C G T A C G T A C G T A C G T A T G C A T G C A C G T A T C G A C G T A G T C G T A C G T A C C G A T A T C G G T A C C T G A A C T G
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCTGTCCCTGCAG
GSCTGTCACTCA--
 A C G T A T G C A T G C A C G T A T C G A C G T A G T C G T A C G T A C C G A T A T C G G T A C C T G A A C T G
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CCTGTCCCTGCAG
AAAGACCTGTCAATCC--
 A C G T A C G T A C G T A C G T A C G T A T G C A T G C A C G T A T C G A C G T A G T C G T A C G T A C C G A T A T C G G T A C C T G A A C T G
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C A C G T A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCTGTCCCTGCAG-
--NGTCCCNNGGGA
 A T G C A T G C A C G T A T C G A C G T A G T C G T A C G T A C C G A T A T C G G T A C C T G A A C T G A C G T
A C G T A C G T C T A G A T C G G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A