Information for 5-GGCAACTTTTAATGCT (Motif 5)

T A C G A C T G G A T C C G T A C T G A A G T C G C A T C G A T C A G T C A G T T G C A C T G A G C A T T C A G A G T C A G C T
Reverse Opposite:
C T G A A C T G A G T C C G T A G A C T A C G T G T C A G T C A C G T A C G T A A C T G A G C T A C G T C T A G A G T C A G T C
p-value:1e-11
log p-value:-2.608e+01
Information Content per bp:1.656
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif8.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets59.1 +/- 21.0bp
Average Position of motif in Background41.5 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GGCAACTTTTAATGCT
AAGGCAAGTGT-------
 A C G T A C G T T A C G A C T G G A T C C G T A C T G A A G T C G C A T C G A T C A G T C A G T T G C A C T G A G C A T T C A G A G T C A G C T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GGCAACTTTTAATGCT--
--NGANTTTTATGGCTCN
 T A C G A C T G G A T C C G T A C T G A A G T C G C A T C G A T C A G T C A G T T G C A C T G A G C A T T C A G A G T C A G C T A C G T A C G T
A C G T A C G T G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

PB0146.1_Mafk_2/Jaspar

Match Rank:3
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---GGCAACTTTTAATGCT
CCTTGCAATTTTTNN----
 A C G T A C G T A C G T T A C G A C T G G A T C C G T A C T G A A G T C G C A T C G A T C A G T C A G T T G C A C T G A G C A T T C A G A G T C A G C T
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:4
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:GGCAACTTTTAATGCT-
------TTTTATGGCTN
 T A C G A C T G G A T C C G T A C T G A A G T C G C A T C G A T C A G T C A G T T G C A C T G A G C A T T C A G A G T C A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

HLTF/MA0109.1/Jaspar

Match Rank:5
Score:0.49
Offset:2
Orientation:forward strand
Alignment:GGCAACTTTTAATGCT
--AACCTTATAT----
 T A C G A C T G G A T C C G T A C T G A A G T C G C A T C G A T C A G T C A G T T G C A C T G A G C A T T C A G A G T C A G C T
A C G T A C G T C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T A C G T A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:6
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:GGCAACTTTTAATGCT
-------TTTAAT---
 T A C G A C T G G A T C C G T A C T G A A G T C G C A T C G A T C A G T C A G T T G C A C T G A G C A T T C A G A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T

PH0116.1_Nkx2-9/Jaspar

Match Rank:7
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:GGCAACTTTTAATGCT-----
----NATTTAAGTACTTNAAA
 T A C G A C T G G A T C C G T A C T G A A G T C G C A T C G A T C A G T C A G T T G C A C T G A G C A T T C A G A G T C A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--GGCAACTTTTAATGCT
TTGCCAAG----------
 A C G T A C G T T A C G A C T G G A T C C G T A C T G A A G T C G C A T C G A T C A G T C A G T T G C A C T G A G C A T T C A G A G T C A G C T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:GGCAACTTTTAATGCT---
---NAATTTTATTACCNNN
 T A C G A C T G G A T C C G T A C T G A A G T C G C A T C G A T C A G T C A G T T G C A C T G A G C A T T C A G A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.48
Offset:-4
Orientation:forward strand
Alignment:----GGCAACTTTTAATGCT
SCCTAGCAACAG--------
 A C G T A C G T A C G T A C G T T A C G A C T G G A T C C G T A C T G A A G T C G C A T C G A T C A G T C A G T T G C A C T G A G C A T T C A G A G T C A G C T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T