Information for 5-TTAAGCGGCC (Motif 5)

A C G T A C G T C G T A C G T A A C T G T A G C C T A G A C T G A G T C A G T C
Reverse Opposite:
A C T G C T A G A G T C A G T C A T C G A G T C G C A T A C G T G T C A C G T A
p-value:1e-9
log p-value:-2.159e+01
Information Content per bp:1.866
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif21.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets38.1 +/- 24.3bp
Average Position of motif in Background45.9 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)-1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGCGGCC---
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G T A G C C T A G A C T G A G T C A G T C A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTAAGCGGCC
TTAAGTGGT-
 A C G T A C G T C G T A C G T A A C T G T A G C C T A G A C T G A G T C A G T C
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTAAGCGGCC
TTAAGTGGN-
 A C G T A C G T C G T A C G T A A C T G T A G C C T A G A C T G A G T C A G T C
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGCGGCC---
NTNNTTAAGTGGTTANN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G T A G C C T A G A C T G A G T C A G T C A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

PB0184.1_Tbp_2/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TTAAGCGGCC
CCGATTTAAGCGACC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G T A G C C T A G A C T G A G T C A G T C
T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C

PH0115.1_Nkx2-6/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGCGGCC--
AATNTTAAGTGGNTNN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G T A G C C T A G A C T G A G T C A G T C A C G T A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

PH0114.1_Nkx2-5/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGCGGCC--
AAATTCAAGTGGNTTN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G T A G C C T A G A C T G A G T C A G T C A C G T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTAAGCGGCC
NTCAAGTGGN-
 A C G T A C G T A C G T C G T A C G T A A C T G T A G C C T A G A C T G A G T C A G T C
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTAAGCGGCC
TTGAGTGSTT
 A C G T A C G T C G T A C G T A A C T G T A G C C T A G A C T G A G T C A G T C
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTAAGCGGCC
BTBRAGTGSN-
 A C G T A C G T A C G T C G T A C G T A A C T G T A G C C T A G A C T G A G T C A G T C
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T