Information for 10-GCTAATTTCA (Motif 17)

A T C G A T G C C G A T C T G A C T G A A C G T C G A T C G A T G T A C G T C A
Reverse Opposite:
C A G T A C T G G C T A C G T A G T C A A G C T A G C T C G T A A T C G A T G C
p-value:1e-10
log p-value:-2.363e+01
Information Content per bp:1.837
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.53%
Number of Background Sequences with motif151.4
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets55.6 +/- 33.4bp
Average Position of motif in Background54.6 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GCTAATTTCA
NCTAATTA--
 A T C G A T G C C G A T C T G A C T G A A C G T C G A T C G A T G T A C G T C A
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCTAATTTCA
-CTAATTAG-
 A T C G A T G C C G A T C T G A C T G A A C G T C G A T C G A T G T A C G T C A
A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T

VSX1/MA0725.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCTAATTTCA
-CTAATTAT-
 A T C G A T G C C G A T C T G A C T G A A C G T C G A T C G A T G T A C G T C A
A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T A C G T

HOXB2/MA0902.1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GCTAATTTCA
NNTAATTANN
 A T C G A T G C C G A T C T G A C T G A A C G T C G A T C G A T G T A C G T C A
A C T G A G C T C G A T C T G A C G T A A G C T A C G T C T G A A T G C A G C T

Dlx1/MA0879.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GCTAATTTCA
NNTAATTANN
 A T C G A T G C C G A T C T G A C T G A A C G T C G A T C G A T G T A C G T C A
T A C G T G C A C G A T T G C A G C T A C G A T A C G T C T G A A C T G A C T G

EN1/MA0027.2/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GCTAATTTCA
-CTAATTAG-
 A T C G A T G C C G A T C T G A C T G A A C G T C G A T C G A T G T A C G T C A
A C G T A G T C G C A T T C G A C G T A A C G T A C G T C T G A T A C G A C G T

GBX2/MA0890.1/Jaspar

Match Rank:7
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCTAATTTCA
NNTAATTGNN
 A T C G A T G C C G A T C T G A C T G A A C G T C G A T C G A T G T A C G T C A
T A C G A G T C C G A T T G C A T G C A A C G T A G C T C T A G T A C G A G C T

HOXA2/MA0900.1/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCTAATTTCA
GNTAATTANN
 A T C G A T G C C G A T C T G A C T G A A C G T C G A T C G A T G T A C G T C A
A T C G A T C G C G A T C T G A G T C A A G C T A C G T C T G A A T C G A T C G

HESX1/MA0894.1/Jaspar

Match Rank:9
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCTAATTTCA
GCTAATTGGC
 A T C G A T G C C G A T C T G A C T G A A C G T C G A T C G A T G T A C G T C A
T C A G G A T C C G A T C T G A T C G A A C G T A G C T C T A G T C A G G A T C

PH0045.1_Hoxa1/Jaspar

Match Rank:10
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GCTAATTTCA--
CTGAGCTAATTACCGT
 A C G T A C G T A C G T A C G T A T C G A T G C C G A T C T G A C T G A A C G T C G A T C G A T G T A C G T C A A C G T A C G T
A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T