Information for 9-TGTCACAATA (Motif 11)

G A C T A T C G G C A T T G A C C G T A G T A C G T C A G C T A A G C T T G C A
Reverse Opposite:
A C G T T C G A C G A T C A G T C A T G G C A T A C T G C G T A T A G C C T G A
p-value:1e-12
log p-value:-2.776e+01
Information Content per bp:1.675
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif5.34%
Number of Background Sequences with motif608.9
Percentage of Background Sequences with motif1.31%
Average Position of motif in Targets42.5 +/- 24.7bp
Average Position of motif in Background51.5 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:TGTCACAATA--
---GACAATGNN
 G A C T A T C G G C A T T G A C C G T A G T A C G T C A G C T A A G C T T G C A A C G T A C G T
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

PB0120.1_Foxj1_2/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TGTCACAATA----
ATGTCACAACAACAC
 A C G T G A C T A T C G G C A T T G A C C G T A G T A C G T C A G C T A A G C T T G C A A C G T A C G T A C G T A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

PB0168.1_Sox14_2/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGTCACAATA----
CTCACACAATGGCGC
 A C G T G A C T A T C G G C A T T G A C C G T A G T A C G T C A G C T A A G C T T G C A A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

MEIS3/MA0775.1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGTCACAATA
CCTGTCAA----
 A C G T A C G T G A C T A T C G G C A T T G A C C G T A G T A C G T C A G C T A A G C T T G C A
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TGTCACAATA
--NAACAAT-
 G A C T A T C G G C A T T G A C C G T A G T A C G T C A G C T A A G C T T G C A
A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGTCACAATA
NTGTCAN----
 A C G T G A C T A T C G G C A T T G A C C G T A G T A C G T C A G C T A A G C T T G C A
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T

ZBED1/MA0749.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGTCACAATA-
TATGTCGCGATAG
 A C G T A C G T G A C T A T C G G C A T T G A C C G T A G T A C G T C A G C T A A G C T T G C A A C G T
G A C T T G C A C G A T C T A G A G C T A G T C C T A G A G T C T C A G C T G A A G C T G C T A C A T G

SRY/MA0084.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGTCACAATA
GTAAACAAT-
 G A C T A T C G G C A T T G A C C G T A G T A C G T C A G C T A A G C T T G C A
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGTCACAATA----
TCACGGAACAATAGGTG
 A C G T A C G T A C G T G A C T A T C G G C A T T G A C C G T A G T A C G T C A G C T A A G C T T G C A A C G T A C G T A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TGTCACAATA
---AACAAT-
 G A C T A T C G G C A T T G A C C G T A G T A C G T C A G C T A A G C T T G C A
A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T