Information for 6-GCCGGAGCCACAATGG (Motif 10)

A T C G A G T C G T A C A C T G C T A G C G T A A C T G A G T C A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A G C A T C G A T C T A G A C G T A C T G A C T G A G T C A C G T A G T C A G T C A C T G A C T G A T G C
p-value:1e-9
log p-value:-2.096e+01
Information Content per bp:1.878
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets76.0 +/- 11.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCCGGAGCCACAATGG
--CGGAGC--------
 A T C G A G T C G T A C A C T G C T A G C G T A A C T G A G T C A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G
A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:GCCGGAGCCACAATGG
--------AACAAAGG
 A T C G A G T C G T A C A C T G C T A G C G T A A C T G A G T C A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCCGGAGCCACAATGG
-ARGAGGMCAAAATGW
 A T C G A G T C G T A C A C T G C T A G C G T A A C T G A G T C A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G
A C G T T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

YY1/MA0095.2/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GCCGGAGCCACAATGG
---GCNGCCATCTTG-
 A T C G A G T C G T A C A C T G C T A G C G T A A C T G A G T C A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G
A C G T A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T

Sox17/MA0078.1/Jaspar

Match Rank:5
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:GCCGGAGCCACAATGG-
--------GACAATGNN
 A T C G A G T C G T A C A C T G C T A G C G T A A C T G A G T C A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GCCGGAGCCACAATGG
----AAACCACANN--
 A T C G A G T C G T A C A C T G C T A G C G T A A C T G A G T C A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G
A C G T A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GCCGGAGCCACAATGG
------VRAACAATGG
 A T C G A G T C G T A C A C T G C T A G C G T A A C T G A G T C A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GCCGGAGCCACAATGG-----
----NNTNNACAATGGGANNN
 A T C G A G T C G T A C A C T G C T A G C G T A A C T G A G T C A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:GCCGGAGCCACAATGG
--------RACAAWGG
 A T C G A G T C G T A C A C T G C T A G C G T A A C T G A G T C A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GCCGGAGCCACAATGG
------VRRACAAWGG
 A T C G A G T C G T A C A C T G C T A G C G T A A C T G A G T C A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G