Information for 7-SGTCTGYCWATSA (Motif 13)

A T C G A C T G A C G T A G T C A C G T A C T G A G C T A G T C G C T A C G T A A C G T A T C G C G T A
Reverse Opposite:
C G A T A T G C G T C A A C G T C G A T C T A G C T G A G T A C C G T A A C T G C G T A A G T C A T G C
p-value:1e-8
log p-value:-2.049e+01
Information Content per bp:1.862
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.10%
Number of Background Sequences with motif8.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.9 +/- 29.9bp
Average Position of motif in Background54.4 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:SGTCTGYCWATSA
-GSCTGTCACTCA
 A T C G A C T G A C G T A G T C A C G T A C T G A G C T A G T C G C T A C G T A A C G T A T C G C G T A
A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.72
Offset:2
Orientation:forward strand
Alignment:SGTCTGYCWATSA-
--NCTGTCAATCAN
 A T C G A C T G A C G T A G T C A C G T A C T G A G C T A G T C G C T A C G T A A C G T A T C G C G T A A C G T
A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:SGTCTGYCWATSA-
--SCTGTCAVTCAV
 A T C G A C T G A C G T A G T C A C G T A C T G A G C T A G T C G C T A C G T A A C G T A T C G C G T A A C G T
A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---SGTCTGYCWATSA
VBSYGTCTGG------
 A C G T A C G T A C G T A T C G A C T G A C G T A G T C A C G T A C T G A G C T A G T C G C T A C G T A A C G T A T C G C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---SGTCTGYCWATSA
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A T C G A C T G A C G T A G T C A C G T A C T G A G C T A G T C G C T A C G T A A C G T A T C G C G T A
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:SGTCTGYCWATSA
TGTCTGDCACCT-
 A T C G A C T G A C G T A G T C A C G T A C T G A G C T A G T C G C T A C G T A A C G T A T C G C G T A
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:SGTCTGYCWATSA
--GCTGTCAA---
 A T C G A C T G A C G T A G T C A C G T A C T G A G C T A G T C G C T A C G T A A C G T A T C G C G T A
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:SGTCTGYCWATSA
GGTCTGGCAT---
 A T C G A C T G A C G T A G T C A C G T A C T G A G C T A G T C G C T A C G T A A C G T A T C G C G T A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-SGTCTGYCWATSA
CTGTCTGG------
 A C G T A T C G A C T G A C G T A G T C A C G T A C T G A G C T A G T C G C T A C G T A A C G T A T C G C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:SGTCTGYCWATSA
--CCTGTCAA---
 A T C G A C T G A C G T A G T C A C G T A C T G A G C T A G T C G C T A C G T A A C G T A T C G C G T A
A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T