Information for 9-CAGAAHTAGGACAAAA (Motif 12)

G A T C C G T A C T A G C T G A C G T A G C T A A C G T C G T A C T A G T C A G C G T A G A T C G C T A C T G A C G T A C T G A
Reverse Opposite:
A G C T A C G T A G C T C G A T C T A G A C G T A G T C A G T C C G A T C G T A C A G T C G A T A G C T A G T C A C G T C T A G
p-value:1e-8
log p-value:-2.060e+01
Information Content per bp:1.789
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.52%
Number of Background Sequences with motif18.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets60.2 +/- 24.0bp
Average Position of motif in Background47.0 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0148.1_Mtf1_2/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CAGAAHTAGGACAAAA-
---AAATAAGAAAAAAC
 G A T C C G T A C T A G C T G A C G T A G C T A A C G T C G T A C T A G T C A G C G T A G A T C G C T A C T G A C G T A C T G A A C G T
A C G T A C G T A C G T G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

MEF2C/MA0497.1/Jaspar

Match Rank:2
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CAGAAHTAGGACAAAA
ATGCTAAAAATAGAA-----
 A C G T A C G T A C G T A C G T G A T C C G T A C T A G C T G A C G T A G C T A A C G T C G T A C T A G T C A G C G T A G A T C G C T A C T G A C G T A C T G A
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CAGAAHTAGGACAAAA
DCYAAAAATAGM------
 A C G T A C G T G A T C C G T A C T A G C T G A C G T A G C T A A C G T C G T A C T A G T C A G C G T A G A T C G C T A C T G A C G T A C T G A
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:4
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CAGAAHTAGGACAAAA
KCCAAAAATAGC------
 A C G T A C G T G A T C C G T A C T A G C T G A C G T A G C T A A C G T C G T A C T A G T C A G C G T A G A T C G C T A C T G A C G T A C T G A
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T

PB0032.1_IRC900814_1/Jaspar

Match Rank:5
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CAGAAHTAGGACAAAA---
---ATTTACGACAAATAGC
 G A T C C G T A C T A G C T G A C G T A G C T A A C G T C G T A C T A G T C A G C G T A G A T C G C T A C T G A C G T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C G A T G A C T A G C T G C T A A G T C A C T G C T G A T G A C C T G A C G T A G C T A G C A T C G T A C T A G A G T C

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CAGAAHTAGGACAAAA
TATAAGTAGGTCAA--
 G A T C C G T A C T A G C T G A C G T A G C T A A C G T C G T A C T A G T C A G C G T A G A T C G C T A C T G A C G T A C T G A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T

PB0129.1_Glis2_2/Jaspar

Match Rank:7
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CAGAAHTAGGACAAAA--
----AATATTAATAAAGA
 G A T C C G T A C T A G C T G A C G T A G C T A A C G T C G T A C T A G T C A G C G T A G A T C G C T A C T G A C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C G T A A C G T C T G A C G A T C A G T C T G A G C T A G C A T G C T A C G T A G T C A C T A G T C G A

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:CAGAAHTAGGACAAAA-
-------AAAACAAAGG
 G A T C C G T A C T A G C T G A C G T A G C T A A C G T C G T A C T A G T C A G C G T A G A T C G C T A C T G A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CAGAAHTAGGACAAAA
---AAYTAGGTCA---
 G A T C C G T A C T A G C T G A C G T A G C T A A C G T C G T A C T A G T C A G C G T A G A T C G C T A C T G A C G T A C T G A
A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T

PB0177.1_Sox7_2/Jaspar

Match Rank:10
Score:0.50
Offset:-10
Orientation:reverse strand
Alignment:----------CAGAAHTAGGACAAAA
NNCNNNCNCANACAATTAGNAC----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C T A G C T G A C G T A G C T A A C G T C G T A C T A G T C A G C G T A G A T C G C T A C T G A C G T A C T G A
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C A C G T A C G T A C G T A C G T