Information for 10-SAGCMARTAAATM (Motif 12)

A T C G C G T A A C T G A G T C G T A C C G T A C T A G G A C T C G T A C G T A C G T A A C G T G T A C
Reverse Opposite:
A C T G C G T A A C G T A C G T A C G T C G T A A G T C A C G T A C T G A C T G A G T C A C G T A T G C
p-value:1e-11
log p-value:-2.571e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.2 +/- 27.3bp
Average Position of motif in Background8.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:SAGCMARTAAATM--
--GGCCATAAATCAC
 A T C G C G T A A C T G A G T C G T A C C G T A C T A G G A C T C G T A C G T A C G T A A C G T G T A C A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-SAGCMARTAAATM--
AGAGCCATAAAATTCG
 A C G T A T C G C G T A A C T G A G T C G T A C C G T A C T A G G A C T C G T A C G T A C G T A A C G T G T A C A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.67
Offset:3
Orientation:forward strand
Alignment:SAGCMARTAAATM
---CCAATAAAAC
 A T C G C G T A A C T G A G T C G T A C C G T A C T A G G A C T C G T A C G T A C G T A A C G T G T A C
A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.66
Offset:3
Orientation:forward strand
Alignment:SAGCMARTAAATM
---CCAATAAAAA
 A T C G C G T A A C T G A G T C G T A C C G T A C T A G G A C T C G T A C G T A C G T A A C G T G T A C
A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:SAGCMARTAAATM-
--GGCCATAAATCA
 A T C G C G T A A C T G A G T C G T A C C G T A C T A G G A C T C G T A C G T A C G T A A C G T G T A C A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:SAGCMARTAAATM-
--GGCCATAAATCA
 A T C G C G T A A C T G A G T C G T A C C G T A C T A G G A C T C G T A C G T A C G T A A C G T G T A C A C G T
A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Hmx1/MA0896.1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--SAGCMARTAAATM--
ACAAGCAATTAATGAAT
 A C G T A C G T A T C G C G T A A C T G A G T C G T A C C G T A C T A G G A C T C G T A C G T A C G T A A C G T G T A C A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--SAGCMARTAAATM--
ACAAGCAATTAATGAAT
 A C G T A C G T A T C G C G T A A C T G A G T C G T A C C G T A C T A G G A C T C G T A C G T A C G T A A C G T G T A C A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:9
Score:0.64
Offset:2
Orientation:forward strand
Alignment:SAGCMARTAAATM
--GCAATAAAAA-
 A T C G C G T A A C T G A G T C G T A C C G T A C T A G G A C T C G T A C G T A C G T A A C G T G T A C
A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:SAGCMARTAAATM---
AACCCAATAAAATTCG
 A T C G C G T A A C T G A G T C G T A C C G T A C T A G G A C T C G T A C G T A C G T A A C G T G T A C A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G