Information for 3-TSSTTKGSMCASYKGY (Motif 3)

A C G T A T G C A T C G A C G T A C G T A C T G A C T G A T C G G T A C A G T C C G T A A T C G A G C T A C T G C T A G A G T C
Reverse Opposite:
C T A G A G T C G T A C C T G A A T G C A C G T A C T G C A T G T A G C A G T C G T A C C G T A C G T A A T G C T A C G C G T A
p-value:1e-13
log p-value:-3.166e+01
Information Content per bp:1.772
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.4 +/- 20.5bp
Average Position of motif in Background58.5 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:1
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:TSSTTKGSMCASYKGY
------NNVCAGCTGB
 A C G T A T G C A T C G A C G T A C G T A C T G A C T G A T C G G T A C A G T C C G T A A T C G A G C T A C T G C T A G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C A T G T C A G T G A C G T A C G T C A T A C G T A G C G C A T T A C G A C T G

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TSSTTKGSMCASYKGY
CTGATTGGTCNATTT--
 A C G T A C G T A T G C A T C G A C G T A C G T A C T G A C T G A T C G G T A C A G T C C G T A A T C G A G C T A C T G C T A G A G T C
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T A C G T A C G T

Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:TSSTTKGSMCASYKGY
------NAACAGCTGT
 A C G T A T G C A T C G A C G T A C G T A C T G A C T G A T C G G T A C A G T C C G T A A T C G A G C T A C T G C T A G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T G C A T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G C T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:TSSTTKGSMCASYKGY
------NNACAGCTGC
 A C G T A T G C A T C G A C G T A C G T A C T G A C T G A T C G G T A C A G T C C G T A A T C G A G C T A C T G C T A G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:5
Score:0.53
Offset:5
Orientation:forward strand
Alignment:TSSTTKGSMCASYKGY-
-----NNVVCAGCTGBN
 A C G T A T G C A T C G A C G T A C G T A C T G A C T G A T C G G T A C A G T C C G T A A T C G A G C T A C T G C T A G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.53
Offset:8
Orientation:forward strand
Alignment:TSSTTKGSMCASYKGY--
--------NCAGCTGCTG
 A C G T A T G C A T C G A C G T A C G T A C T G A C T G A T C G G T A C A G T C C G T A A T C G A G C T A C T G C T A G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TSSTTKGSMCASYKGY
-NNTTGGCANN-----
 A C G T A T G C A T C G A C G T A C G T A C T G A C T G A T C G G T A C A G T C C G T A A T C G A G C T A C T G C T A G A G T C
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:8
Score:0.52
Offset:-7
Orientation:forward strand
Alignment:-------TSSTTKGSMCASYKGY
AGAGTGCTGATTGGTCCA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A T C G A C G T A C G T A C T G A C T G A T C G G T A C A G T C C G T A A T C G A G C T A C T G C T A G A G T C
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A A C G T A C G T A C G T A C G T A C G T

PB0047.1_Myf6_1/Jaspar

Match Rank:9
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:TSSTTKGSMCASYKGY-----
-----CNGACACCTGTTCNNN
 A C G T A T G C A T C G A C G T A C G T A C T G A C T G A T C G G T A C A G T C C G T A A T C G A G C T A C T G C T A G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C T A G T C A G T G C A A G T C C T G A T G A C A T G C C G A T C T A G A G C T A G C T T A G C G A C T A G C T A G T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TSSTTKGSMCASYKGY
--CCAGGAACAG----
 A C G T A T G C A T C G A C G T A C G T A C T G A C T G A T C G G T A C A G T C C G T A A T C G A G C T A C T G C T A G A G T C
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T