Information for 3-GGAGCTTGGGATT (Motif 7)

A T C G A C T G C G T A A C T G A G T C A G C T A C G T A C T G A C T G C T A G C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A G T C A G T C G T A C C G T A C T G A A C T G A G T C A C G T A G T C A T G C
p-value:1e-10
log p-value:-2.492e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.0 +/- 24.6bp
Average Position of motif in Background70.0 +/- 16.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCTTGGGATT
CGGAGC--------
 A C G T A T C G A C T G C G T A A C T G A G T C A G C T A C G T A C T G A C T G C T A G C G T A A C G T A C G T
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:2
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:GGAGCTTGGGATT---
-------GGGATTANN
 A T C G A C T G C G T A A C T G A G T C A G C T A C G T A C T G A C T G C T A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:GGAGCTTGGGATT-
------NGGGATTA
 A T C G A C T G C G T A A C T G A G T C A G C T A C G T A C T G A C T G C T A G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

Pitx1/MA0682.1/Jaspar

Match Rank:4
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:GGAGCTTGGGATT--
-------GGGATTAA
 A T C G A C T G C G T A A C T G A G T C A G C T A C G T A C T G A C T G C T A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.56
Offset:7
Orientation:forward strand
Alignment:GGAGCTTGGGATT--
-------RGGATTAR
 A T C G A C T G C G T A A C T G A G T C A G C T A C G T A C T G A C T G C T A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

Nr2e3/MA0164.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGAGCTTGGGATT
-AAGCTTG-----
 A T C G A C T G C G T A A C T G A G T C A G C T A C G T A C T G A C T G C T A G C G T A A C G T A C G T
A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GGAGCTTGGGATT---
------VRGGATTARN
 A T C G A C T G C G T A A C T G A G T C A G C T A C G T A C T G A C T G C T A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

GSC/MA0648.1/Jaspar

Match Rank:8
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GGAGCTTGGGATT---
------NNGGATTAGN
 A T C G A C T G C G T A A C T G A G T C A G C T A C G T A C T G A C T G C T A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:GGAGCTTGGGATT--
-------NGGATTAA
 A T C G A C T G C G T A A C T G A G T C A G C T A C G T A C T G A C T G C T A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

GSC2/MA0891.1/Jaspar

Match Rank:10
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GGAGCTTGGGATT---
------GNGGATTAGN
 A T C G A C T G C G T A A C T G A G T C A G C T A C G T A C T G A C T G C T A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G