Information for 19-CTGGTGCCACGCH (Motif 40)

A T G C G A C T A C T G T A C G C A G T A C T G T A G C G T A C G T C A T A G C A T C G A T G C G A C T
Reverse Opposite:
C T G A T A C G T A G C A T C G C A G T C A T G A T C G T G A C G T C A A T G C T G A C C T G A T A C G
p-value:1e-6
log p-value:-1.452e+01
Information Content per bp:1.411
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.8 +/- 16.5bp
Average Position of motif in Background64.5 +/- 6.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CTGGTGCCACGCH
--CGTGCCAAG--
 A T G C G A C T A C T G T A C G C A G T A C T G T A G C G T A C G T C A T A G C A T C G A T G C G A C T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CTGGTGCCACGCH
---ATGCCAACC-
 A T G C G A C T A C T G T A C G C A G T A C T G T A G C G T A C G T C A T A G C A T C G A T G C G A C T
A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTGGTGCCACGCH---
ACTATGCCAACCTACC
 A T G C G A C T A C T G T A C G C A G T A C T G T A G C G T A C G T C A T A G C A T C G A T G C G A C T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

PB0113.1_E2F3_2/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CTGGTGCCACGCH-
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T A T G C G A C T A C T G T A C G C A G T A C T G T A G C G T A C G T C A T A G C A T C G A T G C G A C T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CTGGTGCCACGCH
----TGCCAA---
 A T G C G A C T A C T G T A C G C A G T A C T G T A G C G T A C G T C A T A G C A T C G A T G C G A C T
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CTGGTGCCACGCH----
---GTGCCACGCGACTG
 A T G C G A C T A C T G T A C G C A G T A C T G T A G C G T A C G T C A T A G C A T C G A T G C G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CTGGTGCCACGCH
---TTGCCAAG--
 A T G C G A C T A C T G T A C G C A G T A C T G T A G C G T A C G T C A T A G C A T C G A T G C G A C T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTGGTGCCACGCH
--GGTGCCAAGT-
 A T G C G A C T A C T G T A C G C A G T A C T G T A G C G T A C G T C A T A G C A T C G A T G C G A C T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

POL011.1_XCPE1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CTGGTGCCACGCH
--GGTCCCGCCC-
 A T G C G A C T A C T G T A C G C A G T A C T G T A G C G T A C G T C A T A G C A T C G A T G C G A C T
A C G T A C G T A C T G A T C G A C G T A G T C A G T C A G T C C T A G A G T C A T G C A G T C A C G T

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTGGTGCCACGCH
---ATGCCCACC-
 A T G C G A C T A C T G T A C G C A G T A C T G T A G C G T A C G T C A T A G C A T C G A T G C G A C T
A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T