Information for 1-CAAAATGGCG (Motif 1)

T A G C T C G A G T C A T G C A T G C A A C G T C A T G T C A G G A T C T A C G
Reverse Opposite:
A T G C C T A G A G T C G T A C T G C A A C G T A C G T C A G T A G C T A T C G
p-value:1e-18
log p-value:-4.263e+01
Information Content per bp:1.656
Number of Target Sequences with motif75.0
Percentage of Target Sequences with motif8.17%
Number of Background Sequences with motif1116.3
Percentage of Background Sequences with motif2.43%
Average Position of motif in Targets49.4 +/- 23.8bp
Average Position of motif in Background52.0 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CAAAATGGCG--
CAAGATGGCGGC
 T A G C T C G A G T C A T G C A T G C A A C G T C A T G T C A G G A T C T A C G A C G T A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.85
Offset:0
Orientation:forward strand
Alignment:CAAAATGGCG--
CAAGATGGCGGC
 T A G C T C G A G T C A T G C A T G C A A C G T C A T G T C A G G A T C T A C G A C G T A C G T
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:CAAAATGGCG---
--TAATGGCGGNC
 T A G C T C G A G T C A T G C A T G C A A C G T C A T G T C A G G A T C T A C G A C G T A C G T A C G T
A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

E2F2/MA0864.1/Jaspar

Match Rank:4
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CAAAATGGCG-------
-AAAATGGCGCCATTTT
 T A G C T C G A G T C A T G C A T G C A A C G T C A T G T C A G G A T C T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C A T G C G C T A G C A T C G A T C G A T G C A T

E2F3/MA0469.2/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CAAAATGGCG--------
AAAAATGGCGCCATTTTT
 T A G C T C G A G T C A T G C A T G C A A C G T C A T G T C A G G A T C T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CAAAATGGCG-------
NAGANTGGCGGGGNGNA
 T A G C T C G A G T C A T G C A T G C A A C G T C A T G T C A G G A T C T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

PB0168.1_Sox14_2/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CAAAATGGCG-
CTCACACAATGGCGC
 A C G T A C G T A C G T A C G T T A G C T C G A G T C A T G C A T G C A A C G T C A T G T C A G G A T C T A C G A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CAAAATGGCG---
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T T A G C T C G A G T C A T G C A T G C A A C G T C A T G T C A G G A T C T A C G A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CAAAATGGCG
AACAAAGG--
 T A G C T C G A G T C A T G C A T G C A A C G T C A T G T C A G G A T C T A C G
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CAAAATGGCG
RACAAWGG--
 T A G C T C G A G T C A T G C A T G C A A C G T C A T G T C A G G A T C T A C G
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T