Information for 3-CCWCCAGRGGGCR (Motif 2)

A T G C A G T C C G A T A T G C G A T C C T G A A C T G T C A G C A T G A C T G C T A G T G A C T C G A
Reverse Opposite:
A G C T A C T G A G T C G T A C G T A C A G T C A G T C G A C T C T A G A T C G G C T A C T A G A T C G
p-value:1e-26
log p-value:-6.034e+01
Information Content per bp:1.706
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif5.94%
Number of Background Sequences with motif207.7
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets54.6 +/- 26.8bp
Average Position of motif in Background48.5 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-CCWCCAGRGGGCR------
GCCASCAGGGGGCGCYVNNG
 A C G T A T G C A G T C C G A T A T G C G A T C C T G A A C T G T C A G C A T G A C T G C T A G T G A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---CCWCCAGRGGGCR---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A T G C A G T C C G A T A T G C G A T C C T G A A C T G T C A G C A T G A C T G C T A G T G A C T C G A A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---CCWCCAGRGGGCR----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A T G C A G T C C G A T A T G C G A T C C T G A A C T G T C A G C A T G A C T G C T A G T G A C T C G A A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:4
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CCWCCAGRGGGCR
CACCCCCGGGGGGG-
 A C G T A C G T A T G C A G T C C G A T A T G C G A T C C T G A A C T G T C A G C A T G A C T G C T A G T G A C T C G A
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CCWCCAGRGGGCR
NCCCCCCCGGGGGGN
 A C G T A C G T A T G C A G T C C G A T A T G C G A T C C T G A A C T G T C A G C A T G A C T G C T A G T G A C T C G A
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCWCCAGRGGGCR
ACCCCCCCGGGGGGN
 A C G T A C G T A T G C A G T C C G A T A T G C G A T C C T G A A C T G T C A G C A T G A C T G C T A G T G A C T C G A
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

PB0204.1_Zfp740_2/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCWCCAGRGGGCR---
ANTNCCGGGGGGAANTT
 A C G T A T G C A G T C C G A T A T G C G A T C C T G A A C T G T C A G C A T G A C T G C T A G T G A C T C G A A C G T A C G T A C G T
C T G A A G T C G A C T G A C T T A G C A T G C T A C G T A C G A C T G C T A G C T A G C T A G C G T A G T C A G A C T G A C T G A C T

PB0076.1_Sp4_1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCWCCAGRGGGCR-----
-NNNAAGGGGGCGGGNNN
 A T G C A G T C C G A T A T G C G A T C C T G A A C T G T C A G C A T G A C T G C T A G T G A C T C G A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCWCCAGRGGGCR
TCCCCTGGGGAC-
 A T G C A G T C C G A T A T G C G A T C C T G A A C T G T C A G C A T G A C T G C T A G T G A C T C G A
A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C A C G T

INSM1/MA0155.1/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCWCCAGRGGGCR
-TGTCAGGGGGCG
 A T G C A G T C C G A T A T G C G A T C C T G A A C T G T C A G C A T G A C T G C T A G T G A C T C G A
A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G