Information for 8-CCAAKGCTACTGA (Motif 12)

A G T C G T A C C G T A C T G A A C T G A T C G A G T C C G A T G C T A A G T C A C G T C T A G C T G A
Reverse Opposite:
G A C T A G T C C G T A A C T G C G A T C G T A C T A G A T G C G T A C A G C T A C G T A C T G A C T G
p-value:1e-12
log p-value:-2.798e+01
Information Content per bp:1.773
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif12.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets48.1 +/- 31.4bp
Average Position of motif in Background38.2 +/- 23.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0051.1_Osr2_1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCAAKGCTACTGA----
-CNNNGCTACTGTANNN
 A G T C G T A C C G T A C T G A A C T G A T C G A G T C C G A T G C T A A G T C A C G T C T A G C T G A A C G T A C G T A C G T A C G T
A C G T G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCAAKGCTACTGA
TTGCCATGGCAACN--
 A C G T A C G T A C G T A G T C G T A C C G T A C T G A A C T G A T C G A G T C C G A T G C T A A G T C A C G T C T A G C T G A
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CCAAKGCTACTGA
GTTGCCATGGCAAC---
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A C T G A A C T G A T C G A G T C C G A T G C T A A G T C A C G T C T A G C T G A
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCAAKGCTACTGA
TGCCAA---------
 A C G T A C G T A G T C G T A C C G T A C T G A A C T G A T C G A G T C C G A T G C T A A G T C A C G T C T A G C T G A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCAAKGCTACTGA----
-TNNTGCTACTGTNNNN
 A G T C G T A C C G T A C T G A A C T G A T C G A G T C C G A T G C T A A G T C A C G T C T A G C T G A A C G T A C G T A C G T A C G T
A C G T G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCAAKGCTACTGA
NTCAAGGTCA----
 A C G T A G T C G T A C C G T A C T G A A C T G A T C G A G T C C G A T G C T A A G T C A C G T C T A G C T G A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CCAAKGCTACTGA
GTTGCCATGGCAACCG-
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A C T G A A C T G A T C G A G T C C G A T G C T A A G T C A C G T C T A G C T G A
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCAAKGCTACTGA
TTGCCATGGCAACC--
 A C G T A C G T A C G T A G T C G T A C C G T A C T G A A C T G A T C G A G T C C G A T G C T A A G T C A C G T C T A G C T G A
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCAAKGCTACTGA
BTCAAGGTCA----
 A C G T A G T C G T A C C G T A C T G A A C T G A T C G A G T C C G A T G C T A A G T C A C G T C T A G C T G A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CCAAKGCTACTGA
KGTTGCCATGGCAAC---
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A C T G A A C T G A T C G A G T C C G A T G C T A A G T C A C G T C T A G C T G A
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C A C G T A C G T A C G T