Information for 1-AACYDGHHNDDCHDGT (Motif 1)

C T G A C T G A A T G C G A T C C A G T A C T G G C A T G A T C C G A T C A T G C T G A A G T C G A T C C T A G A T C G G C A T
Reverse Opposite:
C G T A A T G C G A T C C T A G C T A G G A C T G T A C G C A T C T A G C G T A A G T C G T C A C T A G A T C G G A C T G A C T
p-value:1e-237
log p-value:-5.462e+02
Information Content per bp:1.513
Number of Target Sequences with motif313.0
Percentage of Target Sequences with motif41.79%
Number of Background Sequences with motif1732.6
Percentage of Background Sequences with motif3.66%
Average Position of motif in Targets54.1 +/- 19.3bp
Average Position of motif in Background50.8 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer

Match Rank:1
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-AACYDGHHNDDCHDGT---
AAACYKGTTWDACMRGTTTB
 A C G T C T G A C T G A A T G C G A T C C A G T A C T G G C A T G A T C C G A T C A T G C T G A A G T C G A T C C T A G A T C G G C A T A C G T A C G T A C G T
C T G A C T G A C T G A A T G C G A T C C A T G A C T G G A C T G A C T G C A T C G T A C G T A A G T C G T A C C T G A A T C G G C A T G A C T G A C T A G C T

TFCP2/MA0145.3/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AACYDGHHNDDCHDGT
AAACCGGTTT-------
 A C G T C T G A C T G A A T G C G A T C C A G T A C T G G C A T G A T C C G A T C A T G C T G A A G T C G A T C C T A G A T C G G C A T
T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AACYDGHHNDDCHDGT
---BTGABTGACAGS-
 C T G A C T G A A T G C G A T C C A G T A C T G G C A T G A T C C G A T C A T G C T G A A G T C G A T C C T A G A T C G G C A T
A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AACYDGHHNDDCHDGT
---NTGATTGACAGN-
 C T G A C T G A A T G C G A T C C A G T A C T G G C A T G A T C C G A T C A T G C T G A A G T C G A T C C T A G A T C G G C A T
A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T

GRHL1/MA0647.1/Jaspar

Match Rank:5
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AACYDGHHNDDCHDGT
NAAACCGGTTTT------
 A C G T A C G T C T G A C T G A A T G C G A T C C A G T A C T G G C A T G A T C C G A T C A T G C T G A A G T C G A T C C T A G A T C G G C A T
G C T A C G T A C T G A C G T A A T G C G A T C C A T G A C T G G C A T G A C T G C A T C A G T A C G T A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:AACYDGHHNDDCHDGT
----TGAGTGACAGSC
 C T G A C T G A A T G C G A T C C A G T A C T G G C A T G A T C C G A T C A T G C T G A A G T C G A T C C T A G A T C G G C A T
A C G T A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

SNAI2/MA0745.1/Jaspar

Match Rank:7
Score:0.50
Offset:9
Orientation:forward strand
Alignment:AACYDGHHNDDCHDGT--
---------AACAGGTGT
 C T G A C T G A A T G C G A T C C A G T A C T G G C A T G A T C C G A T C A T G C T G A A G T C G A T C C T A G A T C G G C A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T

PH0083.1_Irx3_1/Jaspar

Match Rank:8
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----AACYDGHHNDDCHDGT
AAAATACATGTAATACT---
 A C G T A C G T A C G T A C G T C T G A C T G A A T G C G A T C C A G T A C T G G C A T G A T C C G A T C A T G C T G A A G T C G A T C C T A G A T C G G C A T
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:AACYDGHHNDDCHDGT-
--SCAGYCADGCATGAC
 C T G A C T G A A T G C G A T C C A G T A C T G G C A T G A T C C G A T C A T G C T G A A G T C G A T C C T A G A T C G G C A T A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PH0085.1_Irx4/Jaspar

Match Rank:10
Score:0.48
Offset:-4
Orientation:forward strand
Alignment:----AACYDGHHNDDCHDGT
AATATACATGTAAAACA---
 A C G T A C G T A C G T A C G T C T G A C T G A A T G C G A T C C A G T A C T G G C A T G A T C C G A T C A T G C T G A A G T C G A T C C T A G A T C G G C A T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A A C G T A C G T A C G T