Information for 8-GCGGAGCTCA (Motif 29)

A T C G A G T C A C T G A C T G C G T A A C T G A G T C A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C T G A G T C A C G T A G T C A G T C A C T G A T G C
p-value:1e-6
log p-value:-1.434e+01
Information Content per bp:1.959
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.0 +/- 19.5bp
Average Position of motif in Background45.2 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:GCGGAGCTCA
-CGGAGC---
 A T C G A G T C A C T G A C T G C G T A A C T G A G T C A C G T A G T C C G T A
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:2
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GCGGAGCTCA
RGKGGGCGGAGC---
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C A C T G A C T G C G T A A C T G A G T C A C G T A G T C C G T A
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCGGAGCTCA
--AGRGGTCA
 A T C G A G T C A C T G A C T G C G T A A C T G A G T C A C G T A G T C C G T A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GCGGAGCTCA----
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A T C G A G T C A C T G A C T G C G T A A C T G A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCGGAGCTCA-
-CAAAGGTCAG
 A T C G A G T C A C T G A C T G C G T A A C T G A G T C A C G T A G T C C G T A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GCGGAGCTCA-
---AAGGTCAC
 A T C G A G T C A C T G A C T G C G T A A C T G A G T C A C G T A G T C C G T A A C G T
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCGGAGCTCA----
-CAAAGGTCAAGGG
 A T C G A G T C A C T G A C T G C G T A A C T G A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCGGAGCTCA
--TRAGGTCA
 A T C G A G T C A C T G A C T G C G T A A C T G A G T C A C G T A G T C C G T A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCGGAGCTCA
---CAGCC--
 A T C G A G T C A C T G A C T G C G T A A C T G A G T C A C G T A G T C C G T A
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GCGGAGCTCA
GGGGGCGGGGCC--
 A C G T A C G T A C G T A C G T A T C G A G T C A C T G A C T G C G T A A C T G A G T C A C G T A G T C C G T A
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T A C G T