Information for 1-GGCGTCACGC (Motif 9)

A T C G C A T G A G T C A T C G A C G T A T G C C G T A A T G C A C T G G T A C
Reverse Opposite:
A C T G G T A C A T C G A C G T A T C G T G C A T A G C T A C G G T A C T A G C
p-value:1e-8
log p-value:-2.011e+01
Information Content per bp:1.722
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.23%
Number of Background Sequences with motif100.1
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets53.1 +/- 22.8bp
Average Position of motif in Background52.5 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.74
Offset:5
Orientation:reverse strand
Alignment:GGCGTCACGC-
-----CACGCA
 A T C G C A T G A G T C A T C G A C G T A T G C C G T A A T G C A C T G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GGCGTCACGC
--AGTCACGC
 A T C G C A T G A G T C A T C G A C G T A T G C C G T A A T G C A C T G G T A C
A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GGCGTCACGC--
--TBGCACGCAA
 A T C G C A T G A G T C A T C G A C G T A T G C C G T A A T G C A C T G G T A C A C G T A C G T
A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

PAX1/MA0779.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GGCGTCACGC---------
--CGTCACGCATGACTGCA
 A T C G C A T G A G T C A T C G A C G T A T G C C G T A A T G C A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PB0147.1_Max_2/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GGCGTCACGC-----
-GTGCCACGCGACTG
 A T C G C A T G A G T C A T C G A C G T A T G C C G T A A T G C A C T G G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

PAX9/MA0781.1/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GGCGTCACGC---------
--CGTCACGCATGACTGCA
 A T C G C A T G A G T C A T C G A C G T A T G C C G T A A T G C A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

CREB1/MA0018.2/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGCGTCACGC
TGACGTCA---
 A C G T A T C G C A T G A G T C A T C G A C G T A T G C C G T A A T G C A C T G G T A C
G C A T A C T G C T G A A G T C A T C G A C G T A T G C T C G A A C G T A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGCGTCACGC-
CGCCTCAGGCA
 A T C G C A T G A G T C A T C G A C G T A T G C C G T A A T G C A C T G G T A C A C G T
G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGCGTCACGC-
AGCCTCAGGCA
 A T C G C A T G A G T C A T C G A C G T A T G C C G T A A T G C A C T G G T A C A C G T
G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGCGTCACGC-
AGCCTCAGGCA
 A T C G C A T G A G T C A T C G A C G T A T G C C G T A A T G C A C T G G T A C A C G T
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A