Information for 17-SYKTYRCSRT (Motif 29)

A T G C A G T C A C T G G C A T G A C T T C A G G T A C A T G C C T A G C A G T
Reverse Opposite:
G T C A G A T C T A C G C A T G A G T C C T G A C G T A T G A C T C A G T A C G
p-value:1e-6
log p-value:-1.497e+01
Information Content per bp:1.463
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif39.4
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets49.0 +/- 32.1bp
Average Position of motif in Background49.4 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:SYKTYRCSRT--
CTGTTGCTAGGS
 A T G C A G T C A C T G G C A T G A C T T C A G G T A C A T G C C T A G C A G T A C G T A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-SYKTYRCSRT----
NCCGTTGCTANGNGN
 A C G T A T G C A G T C A C T G G C A T G A C T T C A G G T A C A T G C C T A G C A G T A C G T A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

RUNX2/MA0511.2/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:SYKTYRCSRT--
---TTGCGGTTT
 A T G C A G T C A C T G G C A T G A C T T C A G G T A C A T G C C T A G C A G T A C G T A C G T
A C G T A C G T A C G T A G C T A C G T A C T G G A T C A C T G A C T G A C G T G A C T C G A T

RUNX3/MA0684.1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:SYKTYRCSRT--
--TTTGCGGTTT
 A T G C A G T C A C T G G C A T G A C T T C A G G T A C A T G C C T A G C A G T A C G T A C G T
A C G T A C G T C G A T A G C T A C G T T A C G A G T C A T C G A C T G A C G T A G C T C G A T

PB0055.1_Rfx4_1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-SYKTYRCSRT----
NNCGTTGCTATGGNN
 A C G T A T G C A G T C A C T G G C A T G A C T T C A G G T A C A T G C C T A G C A G T A C G T A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:SYKTYRCSRT------
--GTTGCCATGGNAAC
 A T G C A G T C A C T G G C A T G A C T T C A G G T A C A T G C C T A G C A G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:SYKTYRCSRT-----
-NGTTGCCATGGCAA
 A T G C A G T C A C T G G C A T G A C T T C A G G T A C A T G C C T A G C A G T A C G T A C G T A C G T A C G T A C G T
A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX5/MA0510.2/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:SYKTYRCSRT-------
-CGTTGCCATGGCAACG
 A T G C A G T C A C T G G C A T G A C T T C A G G T A C A T G C C T A G C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

PB0054.1_Rfx3_1/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----SYKTYRCSRT--------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C T G G C A T G A C T T C A G G T A C A T G C C T A G C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

RFX2/MA0600.2/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:SYKTYRCSRT-------
-CGTTGCCATGGCAACG
 A T G C A G T C A C T G G C A T G A C T T C A G G T A C A T G C C T A G C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G