Information for 8-CCTGCCTGGCAGG (Motif 9)

A G T C T A G C A C G T A C T G A G T C A G T C A G C T A C T G A C T G A G T C C G T A A C T G A T C G
Reverse Opposite:
A T G C A G T C C G A T A C T G A G T C A G T C C T G A A C T G A C T G A G T C C G T A A C T G A C T G
p-value:1e-12
log p-value:-2.773e+01
Information Content per bp:1.905
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.6 +/- 27.5bp
Average Position of motif in Background19.3 +/- 10.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCTGCCTGGCAGG
GTCATGCHTGRCTGS
 A C G T A C G T A G T C T A G C A C G T A C T G A G T C A G T C A G C T A C T G A C T G A G T C C G T A A C T G A T C G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCCTGGCAGG
NNACTTGCCTT-----
 A C G T A C G T A C G T A G T C T A G C A C G T A C T G A G T C A G T C A G C T A C T G A C T G A G T C C G T A A C T G A T C G
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCTGCCTGGCAGG
-BTGABTGACAGS
 A G T C T A G C A C G T A C T G A G T C A G T C A G C T A C T G A C T G A G T C C G T A A C T G A T C G
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CCTGCCTGGCAGG
----CTTGGCAA-
 A G T C T A G C A C G T A C T G A G T C A G T C A G C T A C T G A C T G A G T C C G T A A C T G A T C G
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCTGCCTGGCAGG-
--TGAGTGACAGSC
 A G T C T A G C A C G T A C T G A G T C A G T C A G C T A C T G A C T G A G T C C G T A A C T G A T C G A C G T
A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCCTGGCAGG
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A G T C T A G C A C G T A C T G A G T C A G T C A G C T A C T G A C T G A G T C C G T A A C T G A T C G
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCTGCCTGGCAGG
--TTCCNGGAAG-
 A G T C T A G C A C G T A C T G A G T C A G T C A G C T A C T G A C T G A G T C C G T A A C T G A T C G
A C G T A C G T G C A T C A G T T G A C A G T C T A G C T C A G C A T G G T C A C T G A T C A G A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCTGCCTGGCAGG
-NTGATTGACAGN
 A G T C T A G C A C G T A C T G A G T C A G T C A G C T A C T G A C T G A G T C C G T A A C T G A T C G
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCTGCCTGGCAGG-
NCTTCCNGGAAGNN
 A G T C T A G C A C G T A C T G A G T C A G T C A G C T A C T G A C T G A G T C C G T A A C T G A T C G A C G T
T C A G A G T C G A C T A C G T G T A C A G T C C G A T C T A G C A T G G T C A C T G A T C A G A G C T T A C G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCTGCCTGGCAGG-
-CTGTCTGTCACCT
 A G T C T A G C A C G T A C T G A G T C A G T C A G C T A C T G A C T G A G T C C G T A A C T G A T C G A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T