Information for 3-MWSAGTCACATTGMCY (Motif 3)

T G A C G C A T T A C G C T G A A C T G A G C T A G T C C G T A A G T C G T C A A G C T A C G T A C T G G T C A G T A C A G C T
Reverse Opposite:
C T G A A C T G A C G T G T A C G T C A T C G A A C G T C T A G A C G T A C T G C T G A A G T C A G C T A T G C C G T A A C T G
p-value:1e-23
log p-value:-5.452e+01
Information Content per bp:1.718
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif18.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets53.5 +/- 24.5bp
Average Position of motif in Background53.0 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:MWSAGTCACATTGMCY
-NAGGTCACNNTGACC
 T G A C G C A T T A C G C T G A A C T G A G C T A G T C C G T A A G T C G T C A A G C T A C G T A C T G G T C A G T A C A G C T
A C G T T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.75
Offset:2
Orientation:forward strand
Alignment:MWSAGTCACATTGMCY-
--AGGTCACCCTGACCT
 T G A C G C A T T A C G C T G A A C T G A G C T A G T C C G T A A G T C G T C A A G C T A C G T A C T G G T C A G T A C A G C T A C G T
A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

ESR1/MA0112.3/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:MWSAGTCACATTGMCY--
-AAGGTCACGGTGACCTG
 T G A C G C A T T A C G C T G A A C T G A G C T A G T C C G T A A G T C G T C A A G C T A C G T A C T G G T C A G T A C A G C T A C G T A C G T
A C G T C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-MWSAGTCACATTGMCY---
AGTAGGTCACNGTGACCTAC
 A C G T T G A C G C A T T A C G C T G A A C T G A G C T A G T C C G T A A G T C G T C A A G C T A C G T A C T G G T C A G T A C A G C T A C G T A C G T A C G T
G C T A A T C G C A G T C T G A C T A G A C T G C A G T A T G C G T C A G A T C T A G C A C T G C A G T A T C G T G C A G A T C A T G C A G C T C G T A A T G C

USF2/MA0526.1/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:MWSAGTCACATTGMCY
---GGTCACATGAC--
 T G A C G C A T T A C G C T G A A C T G A G C T A G T C C G T A A G T C G T C A A G C T A C G T A C T G G T C A G T A C A G C T
A C G T A C G T A C G T C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C A C G T A C G T

FOSL1/MA0477.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-MWSAGTCACATTGMCY
NATGAGTCACC------
 A C G T T G A C G C A T T A C G C T G A A C T G A G C T A G T C C G T A A G T C G T C A A G C T A C G T A C T G G T C A G T A C A G C T
A T G C T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

JUNB/MA0490.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:MWSAGTCACATTGMCY
ATGAGTCATCN-----
 T G A C G C A T T A C G C T G A A C T G A G C T A G T C C G T A A G T C G T C A A G C T A C G T A C T G G T C A G T A C A G C T
T G C A A C G T A C T G C G T A T A C G A C G T A G T C C G T A A G C T G A T C G T A C A C G T A C G T A C G T A C G T A C G T

USF1/MA0093.2/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:MWSAGTCACATTGMCY
---GGTCACGTGGC--
 T G A C G C A T T A C G C T G A A C T G A G C T A G T C C G T A A G T C G T C A A G C T A C G T A C T G G T C A G T A C A G C T
A C G T A C G T A C G T C T A G C T A G G A C T A G T C C G T A A G T C T C A G C G A T A C T G T C A G A G T C A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.61
Offset:4
Orientation:forward strand
Alignment:MWSAGTCACATTGMCY--
----GTCACGCTCNCTGA
 T G A C G C A T T A C G C T G A A C T G A G C T A G T C C G T A A G T C G T C A A G C T A C G T A C T G G T C A G T A C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

JUND/MA0491.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-MWSAGTCACATTGMCY
NATGAGTCACN------
 A C G T T G A C G C A T T A C G C T G A A C T G A G C T A G T C C G T A A G T C G T C A A G C T A C G T A C T G G T C A G T A C A G C T
A T C G T C G A A C G T A C T G C G T A T A C G A C G T A G T C C G T A A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T