p-value: | 1e-12 |
log p-value: | -2.960e+01 |
Information Content per bp: | 1.860 |
Number of Target Sequences with motif | 7.0 |
Percentage of Target Sequences with motif | 1.07% |
Number of Background Sequences with motif | 3.2 |
Percentage of Background Sequences with motif | 0.01% |
Average Position of motif in Targets | 65.7 +/- 12.2bp |
Average Position of motif in Background | 55.5 +/- 15.8bp |
Strand Bias (log2 ratio + to - strand density) | 1.3 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer
Match Rank: | 1 |
Score: | 0.64 |
Offset: | 2 |
Orientation: | forward strand |
Alignment: | AGTTGGCAAGTTG --TTGCCAAG--- |
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Hic1/MA0739.1/Jaspar
Match Rank: | 2 |
Score: | 0.62 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | AGTTGGCAAGTTG GGTTGGCAT---- |
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NFIA/MA0670.1/Jaspar
Match Rank: | 3 |
Score: | 0.62 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | AGTTGGCAAGTTG NNTTGGCANN--- |
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PB0029.1_Hic1_1/Jaspar
Match Rank: | 4 |
Score: | 0.60 |
Offset: | -4 |
Orientation: | reverse strand |
Alignment: | ----AGTTGGCAAGTTG NGTAGGTTGGCATNNN- |
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Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer
Match Rank: | 5 |
Score: | 0.59 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | AGTTGGCAAGTTG ARNTGACA----- |
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NFIC::TLX1/MA0119.1/Jaspar
Match Rank: | 6 |
Score: | 0.59 |
Offset: | 2 |
Orientation: | reverse strand |
Alignment: | AGTTGGCAAGTTG--- --TTGGCATGGTGCCA |
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NFIX/MA0671.1/Jaspar
Match Rank: | 7 |
Score: | 0.58 |
Offset: | 1 |
Orientation: | reverse strand |
Alignment: | AGTTGGCAAGTTG -NTTGGCANN--- |
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SD0002.1_at_AC_acceptor/Jaspar
Match Rank: | 8 |
Score: | 0.56 |
Offset: | 2 |
Orientation: | forward strand |
Alignment: | AGTTGGCAAGTTG --AAGGCAAGTGT |
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Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer
Match Rank: | 9 |
Score: | 0.56 |
Offset: | 1 |
Orientation: | reverse strand |
Alignment: | AGTTGGCAAGTTG -RHTGWCAR---- |
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NFIC/MA0161.1/Jaspar
Match Rank: | 10 |
Score: | 0.55 |
Offset: | 2 |
Orientation: | forward strand |
Alignment: | AGTTGGCAAGTTG --TTGGCA----- |
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