Information for 2-CCMAATTATAGGCTCA (Motif 2)

A T G C A G T C G T A C G T C A C T G A A C G T A C G T C T G A A C G T C G T A C T A G A C T G A T G C C G A T A T G C C G T A
Reverse Opposite:
A C G T A T C G C G T A A T C G G T A C A G T C C G A T T C G A A G C T C G T A C G T A A G C T A C G T A C G T A C T G A T C G
p-value:1e-16
log p-value:-3.726e+01
Information Content per bp:1.773
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.1 +/- 27.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MSX2/MA0708.1/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCMAATTATAGGCTCA
-CCAATTAA-------
 A T G C A G T C G T A C G T C A C T G A A C G T A C G T C T G A A C G T C G T A C T A G A C T G A T G C C G A T A T G C C G T A
A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCMAATTATAGGCTCA
-CTAATTAA-------
 A T G C A G T C G T A C G T C A C T G A A C G T A C G T C T G A A C G T C G T A C T A G A C T G A T G C C G A T A T G C C G T A
A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCMAATTATAGGCTCA
-CCAATTAG-------
 A T G C A G T C G T A C G T C A C T G A A C G T A C G T C T G A A C G T C G T A C T A G A C T G A T G C C G A T A T G C C G T A
A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nobox/MA0125.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCMAATTATAGGCTCA
ACCAATTA--------
 A T G C A G T C G T A C G T C A C T G A A C G T A C G T C T G A A C G T C G T A C T A G A C T G A T G C C G A T A T G C C G T A
T C G A A T G C G A T C G T C A G T C A A C G T C G A T C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCMAATTATAGGCTCA
-CCAATTAA-------
 A T G C A G T C G T A C G T C A C T G A A C G T A C G T C T G A A C G T C G T A C T A G A C T G A T G C C G A T A T G C C G T A
A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

VSX1/MA0725.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCMAATTATAGGCTCA
-CTAATTAT-------
 A T G C A G T C G T A C G T C A C T G A A C G T A C G T C T G A A C G T C G T A C T A G A C T G A T G C C G A T A T G C C G T A
A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCMAATTATAGGCTCA
-CTAATTAG-------
 A T G C A G T C G T A C G T C A C T G A A C G T A C G T C T G A A C G T C G T A C T A G A C T G A T G C C G A T A T G C C G T A
A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

DLX6/MA0882.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCMAATTATAGGCTCA
-CCAATTAC-------
 A T G C A G T C G T A C G T C A C T G A A C G T A C G T C T G A A C G T C G T A C T A G A C T G A T G C C G A T A T G C C G T A
A C G T T A G C G A T C G T C A G T C A C G A T A G C T G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

LBX2/MA0699.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCMAATTATAGGCTCA
GCCAATTAGC------
 A T G C A G T C G T A C G T C A C T G A A C G T A C G T C T G A A C G T C G T A C T A G A C T G A T G C C G A T A T G C C G T A
T C A G A G T C G A T C T G C A T G C A A C G T A C G T C G T A C T A G T A G C A C G T A C G T A C G T A C G T A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCMAATTATAGGCTCA
NCTAATTA--------
 A T G C A G T C G T A C G T C A C T G A A C G T A C G T C T G A A C G T C G T A C T A G A C T G A T G C C G A T A T G C C G T A
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T