Information for 11-CATGGTGTGCCTC (Motif 17)

T A G C C G T A G A C T T A C G T A C G A C G T C T A G A C G T A T C G A G T C T G A C C G A T A T G C
Reverse Opposite:
T A C G C G T A A C T G C T A G T A G C C G T A G A T C C G T A A T G C A T G C C G T A A C G T A T C G
p-value:1e-10
log p-value:-2.464e+01
Information Content per bp:1.695
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.5 +/- 29.5bp
Average Position of motif in Background49.7 +/- 37.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CATGGTGTGCCTC
NNTCCTGCTGTGNNN-
 A C G T A C G T A C G T T A G C C G T A G A C T T A C G T A C G A C G T C T A G A C G T A T C G A G T C T G A C C G A T A T G C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CATGGTGTGCCTC-
NNNNTTGTGTGCTTNN
 A C G T A C G T T A G C C G T A G A C T T A C G T A C G A C G T C T A G A C G T A T C G A G T C T G A C C G A T A T G C A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CATGGTGTGCCTC-
CCATTGTATGCAAAT
 A C G T T A G C C G T A G A C T T A C G T A C G A C G T C T A G A C G T A T C G A G T C T G A C C G A T A T G C A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CATGGTGTGCCTC-
NNGCGTGTGTGCNGCN
 A C G T A C G T T A G C C G T A G A C T T A C G T A C G A C G T C T A G A C G T A T C G A G T C T G A C C G A T A T G C A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CATGGTGTGCCTC
TCNCCTGCTGNGNNN-
 A C G T A C G T A C G T T A G C C G T A G A C T T A C G T A C G A C G T C T A G A C G T A T C G A G T C T G A C C G A T A T G C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CATGGTGTGCCTC
AGNACAGNCTGTTCTN-
 A C G T A C G T A C G T A C G T T A G C C G T A G A C T T A C G T A C G A C G T C T A G A C G T A T C G A G T C T G A C C G A T A T G C
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T A C G T

Ar/MA0007.3/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CATGGTGTGCCTC
GGGAACACGGTGTACCC-
 A C G T A C G T A C G T A C G T A C G T T A G C C G T A G A C T T A C G T A C G A C G T C T A G A C G T A T C G A G T C T G A C C G A T A T G C
C T A G C T A G C T A G G C T A G T C A T A G C T C G A A G T C T A C G T C A G G A C T A T C G G C A T C G T A G A T C G A T C G A T C A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CATGGTGTGCCTC
TNTCCTGCTGTGNNG-
 A C G T A C G T A C G T T A G C C G T A G A C T T A C G T A C G A C G T C T A G A C G T A T C G A G T C T G A C C G A T A T G C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

NR3C1/MA0113.3/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CATGGTGTGCCTC
NGGAACATNATGTACCC-
 A C G T A C G T A C G T A C G T A C G T T A G C C G T A G A C T T A C G T A C G A C G T C T A G A C G T A T C G A G T C T G A C C G A T A T G C
C A T G C T A G C T A G C G T A T G C A T A G C C T G A G A C T G C A T C T G A G A C T A T C G G C A T G C T A G A T C G A T C G A T C A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CATGGTGTGCCTC-
----CTGTTCCTGG
 T A G C C G T A G A C T T A C G T A C G A C G T C T A G A C G T A T C G A G T C T G A C C G A T A T G C A C G T
A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G