Information for 5-AAGACAAACA (Motif 6)

C G T A C T G A C A T G G T C A G A T C G C T A C G T A G T C A A T G C G C T A
Reverse Opposite:
C G A T T A C G C A G T G C A T C G A T C T A G C A G T G T A C G A C T G C A T
p-value:1e-13
log p-value:-3.193e+01
Information Content per bp:1.550
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif5.05%
Number of Background Sequences with motif504.8
Percentage of Background Sequences with motif1.08%
Average Position of motif in Targets42.1 +/- 24.9bp
Average Position of motif in Background49.2 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AAGACAAACA
BCAGACWA---
 A C G T C G T A C T G A C A T G G T C A G A T C G C T A C G T A G T C A A T G C G C T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AAGACAAACA
AAAAGTCAA---
 A C G T A C G T C G T A C T G A C A T G G T C A G A T C G C T A C G T A G T C A A T G C G C T A
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AAGACAAACA---
AAACAGACAAAGGAAT
 A C G T A C G T A C G T C G T A C T G A C A T G G T C A G A T C G C T A C G T A G T C A A T G C G C T A A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Foxd3/MA0041.1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AAGACAAACA---
-AAACAAACATTC
 C G T A C T G A C A T G G T C A G A T C G C T A C G T A G T C A A T G C G C T A A C G T A C G T A C G T
A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

MF0005.1_Forkhead_class/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AAGACAAACA
-AAATAAACA
 C G T A C T G A C A T G G T C A G A T C G C T A C G T A G T C A A T G C G C T A
A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AAGACAAACA----
CATAAGACCACCATTAC
 A C G T A C G T A C G T C G T A C T G A C A T G G T C A G A T C G C T A C G T A G T C A A T G C G C T A A C G T A C G T A C G T A C G T
A G T C C G A T C A G T C T G A T G C A A C T G G T C A G A T C A T G C G T C A G A T C G A T C G C T A A C G T C A G T C T G A A G C T

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAGACAAACA
ACTAGCCAATCA
 A C G T A C G T C G T A C T G A C A T G G T C A G A T C G C T A C G T A G T C A A T G C G C T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AAGACAAACA
WAAGTAAAYA
 C G T A C T G A C A T G G T C A G A T C G C T A C G T A G T C A A T G C G C T A
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

PB0121.1_Foxj3_2/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AAGACAAACA-----
AACACCAAAACAAAGGA
 A C G T A C G T C G T A C T G A C A T G G T C A G A T C G C T A C G T A G T C A A T G C G C T A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AAGACAAACA
CCAGACAG---
 A C G T C G T A C T G A C A T G G T C A G A T C G C T A C G T A G T C A A T G C G C T A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T