Information for 21-AGGGCATGAAVCA (Motif 32)

C G T A A C T G A C T G A T C G A G T C C T G A A C G T A C T G C G T A G T C A T A G C G T A C C G T A
Reverse Opposite:
A C G T A C T G A C T G A C G T A C G T A G T C C G T A A G C T A C T G A T G C A G T C A G T C A C G T
p-value:1e-7
log p-value:-1.696e+01
Information Content per bp:1.851
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.0 +/- 29.0bp
Average Position of motif in Background23.6 +/- 8.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AGGGCATGAAVCA
---NCGTGACN--
 C G T A A C T G A C T G A T C G A G T C C T G A A C G T A C T G C G T A G T C A T A G C G T A C C G T A
A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGGGCATGAAVCA
-GGCCATAAATCA
 C G T A A C T G A C T G A T C G A G T C C T G A A C G T A C T G C G T A G T C A T A G C G T A C C G T A
A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Klf12/MA0742.1/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AGGGCATGAAVCA
NANAAGGGCGTGGTC--
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G A T C G A G T C C T G A A C G T A C T G C G T A G T C A T A G C G T A C C G T A
C G T A C G T A C G A T C G T A C G T A C T A G T C A G C T A G G A T C C A T G A C G T A T C G C A T G A G C T G T A C A C G T A C G T

JUN(var.2)/MA0489.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGGGCATGAAVCA-
AGGAGATGACTCAT
 C G T A A C T G A C T G A T C G A G T C C T G A A C G T A C T G C G T A G T C A T A G C G T A C C G T A A C G T
C T G A C T A G C T A G C T G A C T A G T C G A A C G T A C T G C G T A A T G C C G A T G T A C C G T A A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGGGCATGAAVCA-
GGAGGTCATTAATTAT
 A C G T A C G T C G T A A C T G A C T G A T C G A G T C C T G A A C G T A C T G C G T A G T C A T A G C G T A C C G T A A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGGGCATGAAVCA
-GGCCATAAATCA
 C G T A A C T G A C T G A T C G A G T C C T G A A C G T A C T G C G T A G T C A T A G C G T A C C G T A
A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGGGCATGAAVCA
TRAGGTCA-------
 A C G T A C G T C G T A A C T G A C T G A T C G A G T C C T G A A C G T A C T G C G T A G T C A T A G C G T A C C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:8
Score:0.56
Offset:6
Orientation:forward strand
Alignment:AGGGCATGAAVCA
------TGACTCA
 C G T A A C T G A C T G A T C G A G T C C T G A A C G T A C T G C G T A G T C A T A G C G T A C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G G T C A T G A C C G A T A T G C C G T A

FOS/MA0476.1/Jaspar

Match Rank:9
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AGGGCATGAAVCA--
----NATGAGTCANN
 C G T A A C T G A C T G A T C G A G T C C T G A A C G T A C T G C G T A G T C A T A G C G T A C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T C G A A C G T A C T G C G T A T A C G A C G T G T A C C G T A A T G C G T C A

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AGGGCATGAAVCA
----CATGAC---
 C G T A A C T G A C T G A T C G A G T C C T G A A C G T A C T G C G T A G T C A T A G C G T A C C G T A
A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T A C G T