Information for 13-GMCATTGCCAAGG (Motif 21)

A C T G G T C A G T A C T C G A C G A T A C G T A C T G G A T C G A T C T C G A C G T A C T A G A C T G
Reverse Opposite:
T G A C A G T C G C A T A C G T C A T G C T A G G T A C G T C A G C T A A C G T A C T G C A G T T G A C
p-value:1e-9
log p-value:-2.213e+01
Information Content per bp:1.691
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif23.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets54.5 +/- 27.9bp
Average Position of motif in Background44.7 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.68
Offset:4
Orientation:forward strand
Alignment:GMCATTGCCAAGG
----TTGCCAAG-
 A C T G G T C A G T A C T C G A C G A T A C G T A C T G G A T C G A T C T C G A C G T A C T A G A C T G
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.68
Offset:3
Orientation:forward strand
Alignment:GMCATTGCCAAGG
---GGTGCCAAGT
 A C T G G T C A G T A C T C G A C G A T A C G T A C T G G A T C G A T C T C G A C G T A C T A G A C T G
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GMCATTGCCAAGG
---CGTGCCAAG-
 A C T G G T C A G T A C T C G A C G A T A C G T A C T G G A T C G A T C T C G A C G T A C T A G A C T G
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GMCATTGCCAAGG--
NNCGTTGCTATGGNN
 A C T G G T C A G T A C T C G A C G A T A C G T A C T G G A T C G A T C T C G A C G T A C T A G A C T G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GMCATTGCCAAGG----
---GTTGCCATGGNAAC
 A C T G G T C A G T A C T C G A C G A T A C G T A C T G G A T C G A T C T C G A C G T A C T A G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GMCATTGCCAAGG--
-----TGCCCAGNHW
 A C T G G T C A G T A C T C G A C G A T A C G T A C T G G A T C G A T C T C G A C G T A C T A G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GMCATTGCCAAGG
-----TGCCAA--
 A C T G G T C A G T A C T C G A C G A T A C G T A C T G G A T C G A T C T C G A C G T A C T A G A C T G
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.59
Offset:6
Orientation:forward strand
Alignment:GMCATTGCCAAGG---
------NTCAAGGTCA
 A C T G G T C A G T A C T C G A C G A T A C G T A C T G G A T C G A T C T C G A C G T A C T A G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GMCATTGCCAAGG--
NCCGTTGCTANGNGN
 A C T G G T C A G T A C T C G A C G A T A C G T A C T G G A T C G A T C T C G A C G T A C T A G A C T G A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GMCATTGCCAAGG------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C T G G T C A G T A C T C G A C G A T A C G T A C T G G A T C G A T C T C G A C G T A C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A