Information for 10-TGCAAGTCAA (Motif 34)

A C G T A C T G A G T C C G T A C G T A A C T G C G A T A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G C G T A A G T C A C G T A C G T A C T G A G T C C G T A
p-value:1e-6
log p-value:-1.571e+01
Information Content per bp:1.970
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif24.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets25.7 +/- 16.2bp
Average Position of motif in Background41.7 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TGCAAGTCAA
-AAAAGTCAA
 A C G T A C T G A G T C C G T A C G T A A C T G C G A T A G T C C G T A C G T A
A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TGCAAGTCAA
SCTGTCAVTCAV
 A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C T G C G A T A G T C C G T A C G T A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGCAAGTCAA--
ATTTGCATAACAAAG
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C T G C G A T A G T C C G T A C G T A A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGCAAGTCAA
ATATGCAAATNNN
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C T G C G A T A G T C C G T A C G T A
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGCAAGTCAA
AGGTGHCAGACA-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C T G C G A T A G T C C G T A C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGCAAGTCAA
NCTGTCAATCAN
 A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C T G C G A T A G T C C G T A C G T A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

PB0068.1_Sox1_1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGCAAGTCAA-----
AATCAATTCAATAATT
 A C G T A C G T A C T G A G T C C G T A C G T A A C T G C G A T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TGCAAGTCAA-
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C T G C G A T A G T C C G T A C G T A A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGCAAGTCAA
AAGGCAAGTGT-
 A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C T G C G A T A G T C C G T A C G T A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TGCAAGTCAA--
ATTTGCATAACAATG
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C T G C G A T A G T C C G T A C G T A A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G