Information for 9-GCACACTAATCAAAGA (Motif 13)

C T A G A G T C C G T A T A G C C G T A A G T C C A G T C G T A C T G A C G A T G T A C C G T A C G T A C G T A T A C G G T C A
Reverse Opposite:
A C G T A T G C C G A T C G A T A C G T A C T G C G T A A G C T C G A T G T C A T A C G C G A T A T C G A C G T T C A G G A T C
p-value:1e-11
log p-value:-2.558e+01
Information Content per bp:1.776
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets69.6 +/- 11.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCACACTAATCAAAGA
CGAAGCACACAAAATA----
 A C G T A C G T A C G T A C G T C T A G A G T C C G T A T A G C C G T A A G T C C A G T C G T A C T G A C G A T G T A C C G T A C G T A C G T A T A C G G T C A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GCACACTAATCAAAGA
----CCYMATAAAA--
 C T A G A G T C C G T A T A G C C G T A A G T C C A G T C G T A C T G A C G A T G T A C C G T A C G T A C G T A T A C G G T C A
A C G T A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GCACACTAATCAAAGA
----NCYAATAAAA--
 C T A G A G T C C G T A T A G C C G T A A G T C C A G T C G T A C T G A C G A T G T A C C G T A C G T A C G T A T A C G G T C A
A C G T A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GCACACTAATCAAAGA
NNTTTGCACACGGCCC-----
 A C G T A C G T A C G T A C G T A C G T C T A G A G T C C G T A T A G C C G T A A G T C C A G T C G T A C T G A C G A T G T A C C G T A C G T A C G T A T A C G G T C A
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GCACACTAATCAAAGA
-----CCAATAAAAA-
 C T A G A G T C C G T A T A G C C G T A A G T C C A G T C G T A C T G A C G A T G T A C C G T A C G T A C G T A T A C G G T C A
A C G T A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCACACTAATCAAAGA--
--AACCCAATAAAATTCG
 C T A G A G T C C G T A T A G C C G T A A G T C C A G T C G T A C T G A C G A T G T A C C G T A C G T A C G T A T A C G G T C A A C G T A C G T
A C G T A C G T T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

PB0130.1_Gm397_2/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GCACACTAATCAAAGA
AGCGGCACACACGCAA----
 A C G T A C G T A C G T A C G T C T A G A G T C C G T A T A G C C G T A A G T C C A G T C G T A C T G A C G A T G T A C C G T A C G T A C G T A T A C G G T C A
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GCACACTAATCAAAGA
-----CCAATAAAAA-
 C T A G A G T C C G T A T A G C C G T A A G T C C A G T C G T A C T G A C G A T G T A C C G T A C G T A C G T A T A C G G T C A
A C G T A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:9
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GCACACTAATCAAAGA
-----CCAATAAAAC-
 C T A G A G T C C G T A T A G C C G T A A G T C C A G T C G T A C T G A C G A T G T A C C G T A C G T A C G T A T A C G G T C A
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCACACTAATCAAAGA--
--CTACCAATAAAATTCT
 C T A G A G T C C G T A T A G C C G T A A G T C C A G T C G T A C T G A C G A T G T A C C G T A C G T A C G T A T A C G G T C A A C G T A C G T
A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T