Information for 12-TGCATGTCAA (Motif 27)

A C G T T A C G A G T C C G T A C G A T A T C G C G A T G A T C C G T A C G T A
Reverse Opposite:
A C G T A C G T C T A G C G T A T A G C C G T A A C G T C T A G A T G C C G T A
p-value:1e-7
log p-value:-1.691e+01
Information Content per bp:1.846
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.74%
Number of Background Sequences with motif112.4
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets48.2 +/- 25.5bp
Average Position of motif in Background55.5 +/- 36.5bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0085.1_Irx4/Jaspar

Match Rank:1
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----TGCATGTCAA---
AATATACATGTAAAACA
 A C G T A C G T A C G T A C G T A C G T T A C G A G T C C G T A C G A T A T C G C G A T G A T C C G T A C G T A A C G T A C G T A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

PH0083.1_Irx3_1/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----TGCATGTCAA---
AAAATACATGTAATACT
 A C G T A C G T A C G T A C G T A C G T T A C G A G T C C G T A C G A T A T C G C G A T G A T C C G T A C G T A A C G T A C G T A C G T
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:3
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TGCATGTCAA--
ATTTGCATAACAAAG
 A C G T A C G T A C G T A C G T T A C G A G T C C G T A C G A T A T C G C G A T G A T C C G T A C G T A A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

PH0084.1_Irx3_2/Jaspar

Match Rank:4
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----TGCATGTCAA---
AATATACATGTAATATA
 A C G T A C G T A C G T A C G T A C G T T A C G A G T C C G T A C G A T A T C G C G A T G A T C C G T A C G T A A C G T A C G T A C G T
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T

PH0086.1_Irx5/Jaspar

Match Rank:5
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TGCATGTCAA---
AATATACATGTAAAATT
 A C G T A C G T A C G T A C G T A C G T T A C G A G T C C G T A C G A T A T C G C G A T G A T C C G T A C G T A A C G T A C G T A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

PH0082.1_Irx2/Jaspar

Match Rank:6
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TGCATGTCAA---
TAAATACATGTAAAATT
 A C G T A C G T A C G T A C G T A C G T T A C G A G T C C G T A C G A T A T C G C G A T G A T C C G T A C G T A A C G T A C G T A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

PH0087.1_Irx6/Jaspar

Match Rank:7
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----TGCATGTCAA---
AAAATACATGTAAAAAT
 A C G T A C G T A C G T A C G T A C G T T A C G A G T C C G T A C G A T A T C G C G A T G A T C C G T A C G T A A C G T A C G T A C G T
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TGCATGTCAA
--CCTGTCAA
 A C G T T A C G A G T C C G T A C G A T A T C G C G A T G A T C C G T A C G T A
A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TGCATGTCAA--
ATTTGCATAACAATG
 A C G T A C G T A C G T A C G T T A C G A G T C C G T A C G A T A T C G C G A T G A T C C G T A C G T A A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TGCATGTCAA----
--TATGCWAATBAV
 A C G T T A C G A G T C C G T A C G A T A T C G C G A T G A T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G