Information for 9-GGTTTTACAAGCC (Motif 8)

A C T G T C A G C G A T A C G T A C G T A C G T C G T A A G T C C G T A C T G A A C T G A G T C A G T C
Reverse Opposite:
C T A G C T A G G T A C A G C T C G A T C T A G A C G T C G T A G T C A G T C A C G T A A G T C G T A C
p-value:1e-13
log p-value:-3.024e+01
Information Content per bp:1.804
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif9.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets44.3 +/- 22.4bp
Average Position of motif in Background56.0 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GGTTTTACAAGCC
-NTTTTACGAGN-
 A C T G T C A G C G A T A C G T A C G T A C G T C G T A A G T C C G T A C T G A A C T G A G T C A G T C
A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGTTTTACAAGCC--
ANATTTTACGAGNNNN
 A C G T A C T G T C A G C G A T A C G T A C G T A C G T C G T A A G T C C G T A C T G A A C T G A G T C A G T C A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGTTTTACAAGCC--
NAATTTTACGAGNTNN
 A C G T A C T G T C A G C G A T A C G T A C G T A C G T C G T A A G T C C G T A C T G A A C T G A G T C A G T C A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HOXC12/MA0906.1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGTTTTACAAGCC
-NTTTTACGACC-
 A C T G T C A G C G A T A C G T A C G T A C G T C G T A A G T C C G T A C T G A A C T G A G T C A G T C
A C G T C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGTTTTACAAGCC
DGWTTTATGRCN-
 A C T G T C A G C G A T A C G T A C G T A C G T C G T A A G T C C G T A C T G A A C T G A G T C A G T C
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGTTTTACAAGCC
-NTTTTACGACT-
 A C T G T C A G C G A T A C G T A C G T A C G T C G T A A G T C C G T A C T G A A C T G A G T C A G T C
A C G T C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GGTTTTACAAGCC
--TTTTATKRGG-
 A C T G T C A G C G A T A C G T A C G T A C G T C G T A A G T C C G T A C T G A A C T G A G T C A G T C
A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GGTTTTACAAGCC
--TTTTATTRGN-
 A C T G T C A G C G A T A C G T A C G T A C G T C G T A A G T C C G T A C T G A A C T G A G T C A G T C
A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T

HOXC11/MA0651.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GGTTTTACAAGCC
-NTTTTACGACC-
 A C T G T C A G C G A T A C G T A C G T A C G T C G T A A G T C C G T A C T G A A C T G A G T C A G T C
A C G T C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C A C G T

PH0067.1_Hoxc12/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GGTTTTACAAGCC--
GNNNTTTTACGACCTNA
 A C G T A C G T A C T G T C A G C G A T A C G T A C G T A C G T C G T A A G T C C G T A C T G A A C T G A G T C A G T C A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A