Information for 7-TGGCCTTGGCATT (Motif 7)

A C G T T A C G C T A G A G T C A G T C A C G T A G C T A C T G A C T G A G T C C G T A A C G T A C G T
Reverse Opposite:
G T C A G T C A A C G T A C T G A G T C A G T C C T G A C G T A A C T G C T A G A G T C A T G C C G T A
p-value:1e-12
log p-value:-2.946e+01
Information Content per bp:1.863
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.1 +/- 15.0bp
Average Position of motif in Background62.3 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:TGGCCTTGGCATT
---NNTTGGCANN
 A C G T T A C G C T A G A G T C A G T C A C G T A G C T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGGCCTTGGCATT
TGACCTTGAV---
 A C G T T A C G C T A G A G T C A G T C A C G T A G C T A C T G A C T G A G T C C G T A A C G T A C G T
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGGCCTTGGCATT
TGACCTTGAN---
 A C G T T A C G C T A G A G T C A G T C A C G T A G C T A C T G A C T G A G T C C G T A A C G T A C G T
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:TGGCCTTGGCATT
----NTTGGCANN
 A C G T T A C G C T A G A G T C A G T C A C G T A G C T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TGGCCTTGGCATT
CTGACCTTTG----
 A C G T A C G T T A C G C T A G A G T C A G T C A C G T A G C T A C T G A C T G A G T C C G T A A C G T A C G T
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGGCCTTGGCATT
BNTGDCCTTG-----
 A C G T A C G T A C G T T A C G C T A G A G T C A G T C A C G T A G C T A C T G A C T G A G T C C G T A A C G T A C G T
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGGCCTTGGCATT
GCTGACCTTGAACTN
 A C G T A C G T A C G T T A C G C T A G A G T C A G T C A C G T A G C T A C T G A C T G A G T C C G T A A C G T A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.66
Offset:5
Orientation:forward strand
Alignment:TGGCCTTGGCATT
-----TTGGCA--
 A C G T T A C G C T A G A G T C A G T C A C G T A G C T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TGGCCTTGGCATT
---GGTTGGCAT-
 A C G T T A C G C T A G A G T C A G T C A C G T A G C T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:TGGCCTTGGCATT
----CTTGGCAA-
 A C G T T A C G C T A G A G T C A G T C A C G T A G C T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T