Information for 6-TCTTKRYCTGAGAGCT (Motif 16)

A C G T A T G C A G C T C A G T C A G T C T A G A G T C G A T C G C A T T C A G C G T A A T C G C G T A A T C G G T A C G A C T
Reverse Opposite:
C T G A C A T G T A G C A C G T T A G C C G A T A G T C C G T A C T A G T C A G G A T C G T C A G T C A C T G A A T C G T G C A
p-value:1e-11
log p-value:-2.555e+01
Information Content per bp:1.565
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif6.89%
Number of Background Sequences with motif1131.9
Percentage of Background Sequences with motif2.40%
Average Position of motif in Targets49.9 +/- 23.5bp
Average Position of motif in Background50.6 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TCTTKRYCTGAGAGCT--
-GTTGACCTTTGACCTTT
 A C G T A T G C A G C T C A G T C A G T C T A G A G T C G A T C G C A T T C A G C G T A A T C G C G T A A T C G G T A C G A C T A C G T A C G T
A C G T T A C G G A C T A C G T A C T G C G T A A G T C A G T C A C G T C G A T A C G T A C T G C G T A G T A C A G T C A G C T G A C T C A G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TCTTKRYCTGAGAGCT
---CTGTCTGTCACCT
 A C G T A T G C A G C T C A G T C A G T C T A G A G T C G A T C G C A T T C A G C G T A A T C G C G T A A T C G G T A C G A C T
A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TCTTKRYCTGAGAGCT
----TGTCTGDCACCT
 A C G T A T G C A G C T C A G T C A G T C T A G A G T C G A T C G C A T T C A G C G T A A T C G C G T A A T C G G T A C G A C T
A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TCTTKRYCTGAGAGCT-
---TGACCTTTGACCTC
 A C G T A T G C A G C T C A G T C A G T C T A G A G T C G A T C G C A T T C A G C G T A A T C G C G T A A T C G G T A C G A C T A C G T
A C G T A C G T A C G T G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C

Nr2f6/MA0677.1/Jaspar

Match Rank:5
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TCTTKRYCTGAGAGCT-
---TGACCTTTGACCTN
 A C G T A T G C A G C T C A G T C A G T C T A G A G T C G A T C G C A T T C A G C G T A A T C G C G T A A T C G G T A C G A C T A C G T
A C G T A C G T A C G T A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G T A C A G C T A G T C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.52
Offset:5
Orientation:forward strand
Alignment:TCTTKRYCTGAGAGCT
-----VGCTGWCAVB-
 A C G T A T G C A G C T C A G T C A G T C T A G A G T C G A T C G C A T T C A G C G T A A T C G C G T A A T C G G T A C G A C T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TCTTKRYCTGAGAGCT-
---TGACCTTTGACCCC
 A C G T A T G C A G C T C A G T C A G T C T A G A G T C G A T C G C A T T C A G C G T A A T C G C G T A A T C G G T A C G A C T A C G T
A C G T A C G T A C G T A G C T T C A G T G C A T G A C T A G C A G C T G A C T A G C T T C A G T G C A G T A C G T A C A G T C A G T C

RXRG/MA0856.1/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TCTTKRYCTGAGAGCT-
---TGACCTTTGACCCC
 A C G T A T G C A G C T C A G T C A G T C T A G A G T C G A T C G C A T T C A G C G T A A T C G C G T A A T C G G T A C G A C T A C G T
A C G T A C G T A C G T A G C T T C A G T G C A G T A C G T A C G A C T G A C T G A C T T C A G T G C A G T A C G T A C A G T C A G T C

RXRB/MA0855.1/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:TCTTKRYCTGAGAGCT-
---TGACCTTTGACCCC
 A C G T A T G C A G C T C A G T C A G T C T A G A G T C G A T C G C A T T C A G C G T A A T C G C G T A A T C G G T A C G A C T A C G T
A C G T A C G T A C G T A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G A T C A G T C A G T C

NR2C2/MA0504.1/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:TCTTKRYCTGAGAGCT--
---TGACCTCTGACCCCN
 A C G T A T G C A G C T C A G T C A G T C T A G A G T C G A T C G C A T T C A G C G T A A T C G C G T A A T C G G T A C G A C T A C G T A C G T
A C G T A C G T A C G T G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T