Information for 1-GKCAVVNTGACCYKGR (Motif 1)

C T A G A C G T A T G C C G T A T A G C T G A C T A C G C G A T A T C G T G C A G A T C G T A C G A C T A C T G A C T G T C A G
Reverse Opposite:
A G T C T G A C G T A C C T G A C A T G C A T G A C G T A T G C G C T A A T G C A C T G A T C G G C A T A T C G T G C A G A T C
p-value:1e-62
log p-value:-1.442e+02
Information Content per bp:1.537
Number of Target Sequences with motif111.0
Percentage of Target Sequences with motif13.91%
Number of Background Sequences with motif811.9
Percentage of Background Sequences with motif1.72%
Average Position of motif in Targets48.1 +/- 19.8bp
Average Position of motif in Background50.4 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-GKCAVVNTGACCYKGR
GGTCANNGTGACCTN--
 A C G T C T A G A C G T A T G C C G T A T A G C T G A C T A C G C G A T A T C G T G C A G A T C G T A C G A C T A C T G A C T G T C A G
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--GKCAVVNTGACCYKGR
AGGNCANNGTGACCT---
 A C G T A C G T C T A G A C G T A T G C C G T A T A G C T G A C T A C G C G A T A T C G T G C A G A T C G T A C G A C T A C T G A C T G T C A G
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T A C G T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:3
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---GKCAVVNTGACCYKGR
AAGGTCACGGTGACCTG--
 A C G T A C G T A C G T C T A G A C G T A T G C C G T A T A G C T G A C T A C G C G A T A T C G T G C A G A T C G T A C G A C T A C T G A C T G T C A G
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G A C G T A C G T

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----GKCAVVNTGACCYKGR
AGTAGGTCACNGTGACCTAC-
 A C G T A C G T A C G T A C G T A C G T C T A G A C G T A T G C C G T A T A G C T G A C T A C G C G A T A T C G T G C A G A T C G T A C G A C T A C T G A C T G T C A G
G C T A A T C G C A G T C T G A C T A G A C T G C A G T A T G C G T C A G A T C T A G C A C T G C A G T A T C G T G C A G A T C A T G C A G C T C G T A A T G C A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.72
Offset:7
Orientation:reverse strand
Alignment:GKCAVVNTGACCYKGR
-------TGACCT---
 C T A G A C G T A T G C C G T A T A G C T G A C T A C G C G A T A T C G T G C A G A T C G T A C G A C T A C T G A C T G T C A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:6
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GKCAVVNTGACCYKGR
TGACCCAGTGACCTAC-
 A C G T C T A G A C G T A T G C C G T A T A G C T G A C T A C G C G A T A T C G T G C A G A T C G T A C G A C T A C T G A C T G T C A G
G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.70
Offset:7
Orientation:reverse strand
Alignment:GKCAVVNTGACCYKGR
-------TGACCTYA-
 C T A G A C G T A T G C C G T A T A G C T G A C T A C G C G A T A T C G T G C A G A T C G T A C G A C T A C T G A C T G T C A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.68
Offset:7
Orientation:reverse strand
Alignment:GKCAVVNTGACCYKGR
-------TGACCYCT-
 C T A G A C G T A T G C C G T A T A G C T G A C T A C G C G A T A T C G T G C A G A T C G T A C G A C T A C T G A C T G T C A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.67
Offset:6
Orientation:reverse strand
Alignment:GKCAVVNTGACCYKGR
------GTGACCTT--
 C T A G A C G T A T G C C G T A T A G C T G A C T A C G C G A T A T C G T G C A G A T C G T A C G A C T A C T G A C T G T C A G
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GKCAVVNTGACCYKGR---
---NNNNTGACCCGGCGCG
 C T A G A C G T A T G C C G T A T A G C T G A C T A C G C G A T A T C G T G C A G A T C G T A C G A C T A C T G A C T G T C A G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G