Information for 3-GACATGACCT (Motif 2)

T C A G T C G A T G A C G T C A C G A T A C T G G T C A T G A C G T A C G A C T
Reverse Opposite:
C T G A C A T G A C T G C A G T T G A C G C T A C A G T A C T G A G C T A G T C
p-value:1e-33
log p-value:-7.616e+01
Information Content per bp:1.535
Number of Target Sequences with motif331.0
Percentage of Target Sequences with motif42.22%
Number of Background Sequences with motif10828.8
Percentage of Background Sequences with motif22.75%
Average Position of motif in Targets53.4 +/- 25.1bp
Average Position of motif in Background50.1 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.78
Offset:4
Orientation:reverse strand
Alignment:GACATGACCT--
----TGACCTYA
 T C A G T C G A T G A C G T C A C G A T A C T G G T C A T G A C G T A C G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.77
Offset:4
Orientation:reverse strand
Alignment:GACATGACCT
----TGACCT
 T C A G T C G A T G A C G T C A C G A T A C T G G T C A T G A C G T A C G A C T
A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.75
Offset:4
Orientation:reverse strand
Alignment:GACATGACCT----
----TGACCTTGAT
 T C A G T C G A T G A C G T C A C G A T A C T G G T C A T G A C G T A C G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:GACATGACCT--
----TGACCYCT
 T C A G T C G A T G A C G T C A C G A T A C T G G T C A T G A C G T A C G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

Esrrg/MA0643.1/Jaspar

Match Rank:5
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GACATGACCT---
---ATGACCTTGA
 T C A G T C G A T G A C G T C A C G A T A C T G G T C A T G A C G T A C G A C T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:6
Score:0.74
Offset:2
Orientation:forward strand
Alignment:GACATGACCT
--CATGAC--
 T C A G T C G A T G A C G T C A C G A T A C T G G T C A T G A C G T A C G A C T
A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GACATGACCT------
NNNNTGACCTTTNNNN
 T C A G T C G A T G A C G T C A C G A T A C T G G T C A T G A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.72
Offset:3
Orientation:forward strand
Alignment:GACATGACCT---
---NTGACCTTGA
 T C A G T C G A T G A C G T C A C G A T A C T G G T C A T G A C G T A C G A C T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GACATGACCT------
NNNNATGACCTTGANTN
 A C G T T C A G T C G A T G A C G T C A C G A T A C T G G T C A T G A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

Esrra/MA0592.2/Jaspar

Match Rank:10
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:GACATGACCT----
---ATGACCTTGAA
 T C A G T C G A T G A C G T C A C G A T A C T G G T C A T G A C G T A C G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A