Information for 13-AGAAAGGCCA (Motif 16)

C G T A A C T G C G T A G T C A C T G A A C T G A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C G T A C A G C T A C G T A C G T A G T C A C G T
p-value:1e-5
log p-value:-1.157e+01
Information Content per bp:1.935
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif80.2
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets54.8 +/- 27.7bp
Average Position of motif in Background53.7 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AGAAAGGCCA
ANGNAAAGGTCA
 A C G T A C G T C G T A A C T G C G T A G T C A C T G A A C T G A C T G A G T C A G T C C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AGAAAGGCCA--
--CAAGGHCANV
 C G T A A C T G C G T A G T C A C T G A A C T G A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGAAAGGCCA----
TCTCAAAGGTCACGAG
 A C G T A C G T C G T A A C T G C G T A G T C A C T G A A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AGAAAGGCCA-
---AAGGTCAC
 C G T A A C T G C G T A G T C A C T G A A C T G A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGAAAGGCCA-
-CAAAGGTCAG
 C G T A A C T G C G T A G T C A C T G A A C T G A C T G A G T C A G T C C G T A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGAAAGGCCA----
GGCAAAAGTCCAATAA
 A C G T A C G T C G T A A C T G C G T A G T C A C T G A A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PB0137.1_Irf3_2/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGAAAGGCCA--
GGAGAAAGGTGCGA
 A C G T A C G T C G T A A C T G C G T A G T C A C T G A A C T G A C T G A G T C A G T C C G T A A C G T A C G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGAAAGGCCA----
TCTCAAAGGTCACCTG
 A C G T A C G T C G T A A C T G C G T A G T C A C T G A A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGAAAGGCCA
--TRAGGTCA
 C G T A A C T G C G T A G T C A C T G A A C T G A C T G A G T C A G T C C G T A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGAAAGGCCA
AACAAAGG---
 A C G T C G T A A C T G C G T A G T C A C T G A A C T G A C T G A G T C A G T C C G T A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T