Information for 20-AGACATTCTCAGR (Motif 21)

G T C A T A C G C T G A A T G C C G T A A G C T G C A T A T G C C G A T A T G C G T C A A C T G C T A G
Reverse Opposite:
A G T C G T A C A C G T A T C G G C T A T A C G C G T A T C G A A C G T A T C G A G C T A T G C A C G T
p-value:1e-6
log p-value:-1.554e+01
Information Content per bp:1.749
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif23.2
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets48.0 +/- 22.1bp
Average Position of motif in Background59.9 +/- 19.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGACATTCTCAGR
-CTCATTGTC---
 G T C A T A C G C T G A A T G C C G T A A G C T G C A T A T G C C G A T A T G C G T C A A C T G C T A G
A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T

TEAD4/MA0809.1/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGACATTCTCAGR
-CACATTCCAT--
 G T C A T A C G C T G A A T G C C G T A A G C T G C A T A T G C C G A T A T G C G T C A A C T G C T A G
A C G T G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T A C G T A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:3
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGACATTCTCAGR---
-AGTATTCTCGGTTGC
 G T C A T A C G C T G A A T G C C G T A A G C T G C A T A T G C C G A T A T G C G T C A A C T G C T A G A C G T A C G T A C G T
A C G T T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AGACATTCTCAGR
---HTTTCCCASG
 G T C A T A C G C T G A A T G C C G T A A G C T G C A T A T G C C G A T A T G C G T C A A C T G C T A G
A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

TEAD1/MA0090.2/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGACATTCTCAGR
-CACATTCCAT--
 G T C A T A C G C T G A A T G C C G T A A G C T G C A T A T G C C G A T A T G C G T C A A C T G C T A G
A C G T G A T C T C G A T G A C G T C A A G C T G C A T G T A C A G T C C G T A G A C T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.53
Offset:-7
Orientation:forward strand
Alignment:-------AGACATTCTCAGR
CAAATCCAGACATCACA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A T A C G C T G A A T G C C G T A A G C T G C A T A T G C C G A T A T G C G T C A A C T G C T A G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AGACATTCTCAGR--
GACCACATTCATACAAT
 A C G T A C G T G T C A T A C G C T G A A T G C C G T A A G C T G C A T A T G C C G A T A T G C G T C A A C T G C T A G A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0175.1_Sox4_2/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AGACATTCTCAGR--
GGAAAAATTGTTAGGAA
 A C G T A C G T G T C A T A C G C T G A A T G C C G T A A G C T G C A T A T G C C G A T A T G C G T C A A C T G C T A G A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--AGACATTCTCAGR
CCAGACRSVB-----
 A C G T A C G T G T C A T A C G C T G A A T G C C G T A A G C T G C A T A T G C C G A T A T G C G T C A A C T G C T A G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--AGACATTCTCAGR
CCAGACAG-------
 A C G T A C G T G T C A T A C G C T G A A T G C C G T A A G C T G C A T A T G C C G A T A T G C G T C A A C T G C T A G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T