Information for 18-CCTTGGCACATAC (Motif 20)

T G A C G A T C A G C T C A G T T A C G C T A G A T G C G C T A T G A C T C G A A G C T T C G A G A T C
Reverse Opposite:
C A T G A G C T T C G A A G C T A C T G C G A T T A C G A G T C A T G C G T C A T C G A C A T G A C T G
p-value:1e-7
log p-value:-1.838e+01
Information Content per bp:1.644
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.78%
Number of Background Sequences with motif291.1
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets56.7 +/- 24.9bp
Average Position of motif in Background49.4 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCTTGGCACATAC
NNTTGGCANN---
 T G A C G A T C A G C T C A G T T A C G C T A G A T G C G C T A T G A C T C G A A G C T T C G A G A T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCTTGGCACATAC
-NTTGGCANN---
 T G A C G A T C A G C T C A G T T A C G C T A G A T G C G C T A T G A C T C G A A G C T T C G A G A T C
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCTTGGCACATAC
-CTTGGCAA----
 T G A C G A T C A G C T C A G T T A C G C T A G A T G C G C T A T G A C T C G A A G C T T C G A G A T C
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCTTGGCACATAC----
-CGAAGCACACAAAATA
 T G A C G A T C A G C T C A G T T A C G C T A G A T G C G C T A T G A C T C G A A G C T T C G A G A T C A C G T A C G T A C G T A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCTTGGCACATAC
--TTGGCA-----
 T G A C G A T C A G C T C A G T T A C G C T A G A T G C G C T A T G A C T C G A A G C T T C G A G A T C
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCTTGGCACATAC----
-AGCGGCACACACGCAA
 T G A C G A T C A G C T C A G T T A C G C T A G A T G C G C T A T G A C T C G A A G C T T C G A G A T C A C G T A C G T A C G T A C G T
A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGGCACATAC
TGACCTTGAN------
 A C G T A C G T A C G T T G A C G A T C A G C T C A G T T A C G C T A G A T G C G C T A T G A C T C G A A G C T T C G A G A T C
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CCTTGGCACATAC
--TTGCAACATN-
 T G A C G A T C A G C T C A G T T A C G C T A G A T G C G C T A T G A C T C G A A G C T T C G A G A T C
A C G T A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCTTGGCACATAC
-CCAGGAACAG--
 T G A C G A T C A G C T C A G T T A C G C T A G A T G C G C T A T G A C T C G A A G C T T C G A G A T C
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGGCACATAC
TGACCTTGAV------
 A C G T A C G T A C G T T G A C G A T C A G C T C A G T T A C G C T A G A T G C G C T A T G A C T C G A A G C T T C G A G A T C
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T