Information for 15-GGGCAAGGAGAGG (Motif 16)

A C T G A C T G A C T G A G T C C G T A C G T A A C T G A T C G C G T A A C T G C G T A A C T G A C T G
Reverse Opposite:
G T A C A G T C C G A T A G T C A C G T A T G C A G T C A C G T C G A T A C T G A G T C A G T C A G T C
p-value:1e-9
log p-value:-2.179e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.0 +/- 18.9bp
Average Position of motif in Background42.7 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGGCAAGGAGAGG
AGGTCAAGGTCA--
 A C G T A C T G A C T G A C T G A G T C C G T A C G T A A C T G A T C G C G T A A C T G C G T A A C T G A C T G
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGGCAAGGAGAGG---
AGGTCACGGAGAGGTCA
 A C G T A C T G A C T G A C T G A G T C C G T A C G T A A C T G A T C G C G T A A C T G C G T A A C T G A C T G A C G T A C G T A C G T
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGGCAAGGAGAGG
AGGTCAAGGTCA--
 A C G T A C T G A C T G A C T G A G T C C G T A C G T A A C T G A T C G C G T A A C T G C G T A A C T G A C T G
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGGCAAGGAGAGG----
RGGTCADNNAGAGGTCAV
 A C G T A C T G A C T G A C T G A G T C C G T A C G T A A C T G A T C G C G T A A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GGGCAAGGAGAGG
TNNGGGCAG-------
 A C G T A C G T A C G T A C T G A C T G A C T G A G T C C G T A C G T A A C T G A T C G C G T A A C T G C G T A A C T G A C T G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGGCAAGGAGAGG
AAGGCAAGTGT---
 A C G T A C T G A C T G A C T G A G T C C G T A C G T A A C T G A T C G C G T A A C T G C G T A A C T G A C T G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GGGCAAGGAGAGG
---CAAGGHCANV
 A C T G A C T G A C T G A G T C C G T A C G T A A C T G A T C G C G T A A C T G C G T A A C T G A C T G
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGGCAAGGAGAGG
TGGGGAAGGGCM--
 A C G T A C T G A C T G A C T G A G T C C G T A C G T A A C T G A T C G C G T A A C T G C G T A A C T G A C T G
G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GGGCAAGGAGAGG
NGTGGGCAT-------
 A C G T A C G T A C G T A C T G A C T G A C T G A G T C C G T A C G T A A C T G A T C G C G T A A C T G C G T A A C T G A C T G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGGCAAGGAGAGG---
AGGTCAACTAAAGGTCA
 A C G T A C T G A C T G A C T G A G T C C G T A C G T A A C T G A T C G C G T A A C T G C G T A A C T G A C T G A C G T A C G T A C G T
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A